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Commit d05afdec authored by Sander Bollen's avatar Sander Bollen
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fix sample_name argument

parent 0e4f2a55
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......@@ -462,7 +462,7 @@ rule collectstats:
output:
out_path("{sample}/{sample}.stats.json")
conda: "envs/collectstats.yml"
shell: "python {input.colpy} --sample-name {params.sample} " \
shell: "python {input.colpy} --sample-name {params.sample_name} " \
"--pre-qc-fastq {input.preqc} --post-qc-fastq {input.postqc} " \
"--mapped-num {input.mnum} --mapped-basenum {input.mbnum} " \
"--unique-num {input.unum} --unique-basenum {input.mbnum} " \
......
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