Commit bd6b308f authored by Sander Bollen's avatar Sander Bollen
Browse files

fix wildcard errors

parent cf509a77
Pipeline #2621 failed with stages
in 1 minute and 34 seconds
......@@ -412,7 +412,7 @@ rule genotype_scatter:
input:
gvcfs = expand("{sample}/vcf/{sample}.g.vcf.gz", sample=SAMPLES),
tbis = expand("{sample}/vcf/{sample}.g.vcf.gz.tbi",
samples=SAMPLES),
sample=SAMPLES),
ref=REFERENCE,
gatk=GATK
params:
......@@ -442,7 +442,8 @@ rule genotype_chunkfile:
executed in snakemake's own environment.
"""
params:
vcfs = expand("multisample/genotype.{chunk}.part.vcf.gz")
vcfs = expand("multisample/genotype.{chunk}.part.vcf.gz",
chunk=CHUNKS)
output:
file = "multisample/chunkfile.txt"
run:
......
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