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Klinische Genetica
capture-lumc
hutspot
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aa2f452e
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aa2f452e
authored
Mar 12, 2019
by
Sander Bollen
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license header for snakefile
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aa2f452e
# hutspot - a DNAseq variant calling pipeline
# Copyright (C) 2017-2019, Sander Bollen, Leiden University Medical Center
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Affero General Public License for more details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
"""
Main Snakefile for the pipeline.
:copyright: (c) 2017-2019 Sander Bollen
:copyright: (c) 2017-2019 Leiden University Medical Center
:license: AGPL-3.0
"""
import json
from functools import partial
from os.path import join, basename
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