Commit 92cff2bb authored by Sander Bollen's avatar Sander Bollen
Browse files

small fixes

parent 3c8b10f4
Pipeline #2589 failed with stages
in 3 minutes and 46 seconds
......@@ -34,6 +34,7 @@ test_dry_run:
test_integration_singularity:
before_script:
- apt-get update && apt-get install -y python3-pip
- pip3 install pyfaidx
- pip3 install -r requirements-dev.txt
script:
- py.test --tag singularity-integration
......
......@@ -21,7 +21,7 @@
- name: test-singularity-integration-no-cluster
command: >-
bash -c '
snakemake --singularity --jobs 100 -w 120
snakemake --use-singularity --jobs 100 -w 120
-r -p -s Snakefile
--config REFERENCE=tests/data/ref.fa GATK=tests/data/ref.fa
DBSNP=tests/data/database.vcf.gz
......
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