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Klinische Genetica
capture-lumc
hutspot
Commits
92cff2bb
Commit
92cff2bb
authored
May 10, 2019
by
Sander Bollen
Browse files
small fixes
parent
3c8b10f4
Pipeline
#2589
failed with stages
in 3 minutes and 46 seconds
Changes
2
Pipelines
1
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.gitlab-ci.yml
View file @
92cff2bb
...
...
@@ -34,6 +34,7 @@ test_dry_run:
test_integration_singularity
:
before_script
:
-
apt-get update && apt-get install -y python3-pip
-
pip3 install pyfaidx
-
pip3 install -r requirements-dev.txt
script
:
-
py.test --tag singularity-integration
...
...
tests/test_integration_run.yml
View file @
92cff2bb
...
...
@@ -21,7 +21,7 @@
-
name
:
test-singularity-integration-no-cluster
command
:
>-
bash -c '
snakemake --singularity --jobs 100 -w 120
snakemake --
use-
singularity --jobs 100 -w 120
-r -p -s Snakefile
--config REFERENCE=tests/data/ref.fa GATK=tests/data/ref.fa
DBSNP=tests/data/database.vcf.gz
...
...
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