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Klinische Genetica
capture-lumc
hutspot
Commits
81e3bcf2
Commit
81e3bcf2
authored
Jul 28, 2020
by
van den Berg
Browse files
Merge branch 'devel' of
https://git.lumc.nl/klinische-genetica/capture-lumc/hutspot
into devel
parents
aebad7df
6ec83a6b
Pipeline
#3987
failed with stages
in 35 minutes and 42 seconds
Changes
1
Pipelines
1
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Inline
Side-by-side
cluster/slurm_cluster.yml
0 → 100644
View file @
81e3bcf2
__default__
:
job_name
:
hutspot
threads
:
1
vmem
:
4G
queue
:
all
time
:
00:30:00
align
:
threads
:
8
vmem
:
4G
time
:
0-2
baserecal
:
threads
:
8
vmem
:
6G
time
:
0-2
covstats
:
vmem
:
6G
cutadapt
:
time
:
0-2
fastqc_raw
:
threads
:
4
time
:
0-1
fastqc_merged
:
threads
:
4
time
:
0-1
fastqc_postqc
:
threads
:
4
time
:
0-1
fqcount_postqc
:
time
:
0-1
gvcf_scatter
:
vmem
:
20G
time
:
0-1
gvcf_gather
:
vmem
:
10G
genotype_scatter
:
vmem
:
20G
time
:
0-1
genotype_gather
:
vmem
:
10G
markdup
:
vmem
:
20G
time
:
0-1
multiqc
:
vmem
:
30G
time
:
0-1
sickle
:
time
:
0-1
split_vcf
:
vmem
:
20G
vcfstats
:
time
:
0-1
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