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Commit 748af886 authored by Sander Bollen's avatar Sander Bollen
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fix another typo

parent 4e8cdda5
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......@@ -192,7 +192,7 @@ rule gvcf_scatter:
conda: "envs/gatk.yml"
shell: "java -jar {input.gatk} -T HaplotypeCaller -ERC GVCF -I "\
"{input.bam} -R {input.ref} -D {input.dbsnp} "\
"-L {params.chunk} -o {input.gvcf}"
"-L {params.chunk} -o {output.gvcf}"
rule gvcf_gather:
......
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