add rulegraph image

img/rulegraph.svg

+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
+ "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
+<!-- Generated by graphviz version 2.36.0 (20140111.2315)
+ -->
+<!-- Title: snakemake_dag Pages: 1 -->
+<svg width="1786pt" height="517pt"
+ viewBox="0.00 0.00 1786.00 516.92" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
+<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 512.921)">
+<title>snakemake_dag</title>
+<polygon fill="white" stroke="none" points="-4,4 -4,-512.921 1782,-512.921 1782,4 -4,4"/>
+<!-- 0 -->
+<g id="node1" class="node"><title>0</title>
+<path fill="none" stroke="#61d856" stroke-width="2" d="M1766,-143C1766,-143 1736,-143 1736,-143 1730,-143 1724,-137 1724,-131 1724,-131 1724,-119 1724,-119 1724,-113 1730,-107 1736,-107 1736,-107 1766,-107 1766,-107 1772,-107 1778,-113 1778,-119 1778,-119 1778,-131 1778,-131 1778,-137 1772,-143 1766,-143"/>
+<text text-anchor="middle" x="1751" y="-122.5" font-family="sans" font-size="10.00">all</text>
+</g>
+<!-- 1 -->
+<g id="node2" class="node"><title>1</title>
+<path fill="none" stroke="#56d8c9" stroke-width="2" d="M1089.5,-441C1089.5,-441 1030.5,-441 1030.5,-441 1024.5,-441 1018.5,-435 1018.5,-429 1018.5,-429 1018.5,-417 1018.5,-417 1018.5,-411 1024.5,-405 1030.5,-405 1030.5,-405 1089.5,-405 1089.5,-405 1095.5,-405 1101.5,-411 1101.5,-417 1101.5,-417 1101.5,-429 1101.5,-429 1101.5,-435 1095.5,-441 1089.5,-441"/>
+<text text-anchor="middle" x="1060" y="-420.5" font-family="sans" font-size="10.00">fastqc_postqc</text>
+</g>
+<!-- 1&#45;&gt;0 -->
+<g id="edge3" class="edge"><title>1&#45;&gt;0</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1079.48,-404.947C1117.18,-370.107 1207.13,-297 1298,-297 1298,-297 1298,-297 1548,-297 1636.49,-297 1705.93,-200.131 1735.07,-151.786"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1738.14,-153.475 1740.2,-143.082 1732.11,-149.922 1738.14,-153.475"/>
+</g>
+<!-- 2 -->
+<g id="node3" class="node"><title>2</title>
+<path fill="none" stroke="#d87d56" stroke-width="2" d="M1671,-36C1671,-36 1627,-36 1627,-36 1621,-36 1615,-30 1615,-24 1615,-24 1615,-12 1615,-12 1615,-6 1621,-0 1627,-0 1627,-0 1671,-0 1671,-0 1677,-0 1683,-6 1683,-12 1683,-12 1683,-24 1683,-24 1683,-30 1677,-36 1671,-36"/>
+<text text-anchor="middle" x="1649" y="-15.5" font-family="sans" font-size="10.00">fastqc_raw</text>
+</g>
+<!-- 2&#45;&gt;0 -->
+<g id="edge2" class="edge"><title>2&#45;&gt;0</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1673.1,-36.308C1678.16,-40.6321 1683.39,-45.344 1688,-50 1703.11,-65.2475 1718.49,-83.8356 1730.16,-98.6918"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1727.67,-101.197 1736.57,-106.954 1733.2,-96.9071 1727.67,-101.197"/>
+</g>
+<!-- 3 -->
+<g id="node4" class="node"><title>3</title>
+<path fill="none" stroke="#56a2d8" stroke-width="2" d="M177.5,-82C177.5,-82 112.5,-82 112.5,-82 106.5,-82 100.5,-76 100.5,-70 100.5,-70 100.5,-58 100.5,-58 100.5,-52 106.5,-46 112.5,-46 112.5,-46 177.5,-46 177.5,-46 183.5,-46 189.5,-52 189.5,-58 189.5,-58 189.5,-70 189.5,-70 189.5,-76 183.5,-82 177.5,-82"/>
+<text text-anchor="middle" x="145" y="-61.5" font-family="sans" font-size="10.00">fastqc_merged</text>
+</g>
+<!-- 3&#45;&gt;0 -->
+<g id="edge5" class="edge"><title>3&#45;&gt;0</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M189.697,-64C230.215,-64 292.181,-64 346,-64 346,-64 346,-64 1548,-64 1608.45,-64 1674.9,-89.3455 1714.5,-107.361"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1713.42,-110.721 1723.97,-111.764 1716.37,-104.374 1713.42,-110.721"/>
+</g>
+<!-- 4 -->
+<g id="node5" class="node"><title>4</title>
+<path fill="none" stroke="#b6d856" stroke-width="2" d="M1675.5,-189C1675.5,-189 1622.5,-189 1622.5,-189 1616.5,-189 1610.5,-183 1610.5,-177 1610.5,-177 1610.5,-165 1610.5,-165 1610.5,-159 1616.5,-153 1622.5,-153 1622.5,-153 1675.5,-153 1675.5,-153 1681.5,-153 1687.5,-159 1687.5,-165 1687.5,-165 1687.5,-177 1687.5,-177 1687.5,-183 1681.5,-189 1675.5,-189"/>
+<text text-anchor="middle" x="1649" y="-168.5" font-family="sans" font-size="10.00">merge_stats</text>
+</g>
+<!-- 4&#45;&gt;0 -->
+<g id="edge1" class="edge"><title>4&#45;&gt;0</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1687.52,-153.74C1696.39,-149.659 1705.83,-145.32 1714.6,-141.284"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1716.18,-144.408 1723.81,-137.049 1713.26,-138.048 1716.18,-144.408"/>
+</g>
+<!-- 5 -->
+<g id="node6" class="node"><title>5</title>
+<path fill="none" stroke="#56d873" stroke-width="2" d="M1472,-189C1472,-189 1398,-189 1398,-189 1392,-189 1386,-183 1386,-177 1386,-177 1386,-165 1386,-165 1386,-159 1392,-153 1398,-153 1398,-153 1472,-153 1472,-153 1478,-153 1484,-159 1484,-165 1484,-165 1484,-177 1484,-177 1484,-183 1478,-189 1472,-189"/>
+<text text-anchor="middle" x="1435" y="-168.5" font-family="sans" font-size="10.00">genotype_gather</text>
+</g>
+<!-- 5&#45;&gt;0 -->
+<g id="edge4" class="edge"><title>5&#45;&gt;0</title>
+<path fill="none" stroke="red" stroke-width="2" d="M1484.36,-153.379C1495.91,-149.754 1508.28,-146.335 1520,-144 1587.48,-130.552 1667.93,-126.596 1713.58,-125.449"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="1713.94,-128.942 1723.86,-125.224 1713.79,-121.944 1713.94,-128.942"/>
+</g>
+<!-- 10 -->
+<g id="node11" class="node"><title>10</title>
+<path fill="none" stroke="#d88d56" stroke-width="2" d="M1562,-189C1562,-189 1532,-189 1532,-189 1526,-189 1520,-183 1520,-177 1520,-177 1520,-165 1520,-165 1520,-159 1526,-153 1532,-153 1532,-153 1562,-153 1562,-153 1568,-153 1574,-159 1574,-165 1574,-165 1574,-177 1574,-177 1574,-183 1568,-189 1562,-189"/>
+<text text-anchor="middle" x="1547" y="-168.5" font-family="sans" font-size="10.00">vcfstats</text>
+</g>
+<!-- 5&#45;&gt;10 -->
+<g id="edge20" class="edge"><title>5&#45;&gt;10</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1484.25,-171C1492.76,-171 1501.48,-171 1509.6,-171"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1509.85,-174.5 1519.85,-171 1509.85,-167.5 1509.85,-174.5"/>
+</g>
+<!-- 6 -->
+<g id="node7" class="node"><title>6</title>
+<path fill="none" stroke="#70d856" stroke-width="2" d="M457.5,-434C457.5,-434 422.5,-434 422.5,-434 416.5,-434 410.5,-428 410.5,-422 410.5,-422 410.5,-410 410.5,-410 410.5,-404 416.5,-398 422.5,-398 422.5,-398 457.5,-398 457.5,-398 463.5,-398 469.5,-404 469.5,-410 469.5,-410 469.5,-422 469.5,-422 469.5,-428 463.5,-434 457.5,-434"/>
+<text text-anchor="middle" x="440" y="-413.5" font-family="sans" font-size="10.00">cutadapt</text>
+</g>
+<!-- 6&#45;&gt;1 -->
+<g id="edge6" class="edge"><title>6&#45;&gt;1</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M454.055,-434.041C465.864,-448.912 484.641,-469.247 506,-480 577.922,-516.21 604.477,-508 685,-508 685,-508 685,-508 826,-508 898.511,-508 976.447,-471.22 1021.29,-446.048"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1023.13,-449.027 1030.08,-441.026 1019.66,-442.95 1023.13,-449.027"/>
+</g>
+<!-- 14 -->
+<g id="node15" class="node"><title>14</title>
+<path fill="none" stroke="#d85656" stroke-width="2" d="M584,-471C584,-471 518,-471 518,-471 512,-471 506,-465 506,-459 506,-459 506,-447 506,-447 506,-441 512,-435 518,-435 518,-435 584,-435 584,-435 590,-435 596,-441 596,-447 596,-447 596,-459 596,-459 596,-465 590,-471 584,-471"/>
+<text text-anchor="middle" x="551" y="-450.5" font-family="sans" font-size="10.00">fqcount_postqc</text>
+</g>
+<!-- 6&#45;&gt;14 -->
+<g id="edge25" class="edge"><title>6&#45;&gt;14</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M469.638,-425.721C477.878,-428.518 487.144,-431.663 496.376,-434.797"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="495.346,-438.144 505.94,-438.044 497.596,-431.515 495.346,-438.144"/>
+</g>
+<!-- 23 -->
+<g id="node24" class="node"><title>23</title>
+<path fill="none" stroke="#97d856" stroke-width="2" d="M566,-398C566,-398 536,-398 536,-398 530,-398 524,-392 524,-386 524,-386 524,-374 524,-374 524,-368 530,-362 536,-362 536,-362 566,-362 566,-362 572,-362 578,-368 578,-374 578,-374 578,-386 578,-386 578,-392 572,-398 566,-398"/>
+<text text-anchor="middle" x="551" y="-377.5" font-family="sans" font-size="10.00">align</text>
+</g>
+<!-- 6&#45;&gt;23 -->
+<g id="edge38" class="edge"><title>6&#45;&gt;23</title>
+<path fill="none" stroke="red" stroke-width="2" d="M469.638,-406.541C483.271,-402.039 499.713,-396.608 514.165,-391.836"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="515.394,-395.115 523.792,-388.656 513.199,-388.469 515.394,-395.115"/>
+</g>
+<!-- 7 -->
+<g id="node8" class="node"><title>7</title>
+<path fill="none" stroke="#568ad8" stroke-width="2" d="M51.5,-178C51.5,-178 12.5,-178 12.5,-178 6.5,-178 0.5,-172 0.5,-166 0.5,-166 0.5,-154 0.5,-154 0.5,-148 6.5,-142 12.5,-142 12.5,-142 51.5,-142 51.5,-142 57.5,-142 63.5,-148 63.5,-154 63.5,-154 63.5,-166 63.5,-166 63.5,-172 57.5,-178 51.5,-178"/>
+<text text-anchor="middle" x="32" y="-157.5" font-family="sans" font-size="10.00">merge_r2</text>
+</g>
+<!-- 7&#45;&gt;3 -->
+<g id="edge8" class="edge"><title>7&#45;&gt;3</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M53.8783,-141.943C71.2098,-126.954 96.0412,-105.478 115.252,-88.8632"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="117.564,-91.4911 122.838,-82.3023 112.985,-86.1966 117.564,-91.4911"/>
+</g>
+<!-- 17 -->
+<g id="node18" class="node"><title>17</title>
+<path fill="none" stroke="#567bd8" stroke-width="2" d="M175.5,-174C175.5,-174 114.5,-174 114.5,-174 108.5,-174 102.5,-168 102.5,-162 102.5,-162 102.5,-150 102.5,-150 102.5,-144 108.5,-138 114.5,-138 114.5,-138 175.5,-138 175.5,-138 181.5,-138 187.5,-144 187.5,-150 187.5,-150 187.5,-162 187.5,-162 187.5,-168 181.5,-174 175.5,-174"/>
+<text text-anchor="middle" x="145" y="-153.5" font-family="sans" font-size="10.00">fqcount_preqc</text>
+</g>
+<!-- 7&#45;&gt;17 -->
+<g id="edge30" class="edge"><title>7&#45;&gt;17</title>
+<path fill="none" stroke="red" stroke-width="2" d="M63.6251,-158.896C72.4836,-158.577 82.4082,-158.22 92.18,-157.867"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="92.3894,-161.362 102.257,-157.504 92.1372,-154.367 92.3894,-161.362"/>
+</g>
+<!-- 21 -->
+<g id="node22" class="node"><title>21</title>
+<path fill="none" stroke="#56d0d8" stroke-width="2" d="M272,-220C272,-220 238,-220 238,-220 232,-220 226,-214 226,-208 226,-208 226,-196 226,-196 226,-190 232,-184 238,-184 238,-184 272,-184 272,-184 278,-184 284,-190 284,-196 284,-196 284,-208 284,-208 284,-214 278,-220 272,-220"/>
+<text text-anchor="middle" x="255" y="-199.5" font-family="sans" font-size="10.00">seqtk_r2</text>
+</g>
+<!-- 7&#45;&gt;21 -->
+<g id="edge35" class="edge"><title>7&#45;&gt;21</title>
+<path fill="none" stroke="red" stroke-width="2" d="M63.6314,-172.014C74.9147,-176.039 87.8966,-180.208 100,-183 138.913,-191.977 184.399,-196.928 215.797,-199.506"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="215.633,-203.004 225.875,-200.292 216.177,-196.025 215.633,-203.004"/>
+</g>
+<!-- 8 -->
+<g id="node9" class="node"><title>8</title>
+<path fill="none" stroke="#a7d856" stroke-width="2" d="M51.5,-124C51.5,-124 12.5,-124 12.5,-124 6.5,-124 0.5,-118 0.5,-112 0.5,-112 0.5,-100 0.5,-100 0.5,-94 6.5,-88 12.5,-88 12.5,-88 51.5,-88 51.5,-88 57.5,-88 63.5,-94 63.5,-100 63.5,-100 63.5,-112 63.5,-112 63.5,-118 57.5,-124 51.5,-124"/>
+<text text-anchor="middle" x="32" y="-103.5" font-family="sans" font-size="10.00">merge_r1</text>
+</g>
+<!-- 8&#45;&gt;3 -->
+<g id="edge7" class="edge"><title>8&#45;&gt;3</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M63.6251,-94.4121C72.0074,-91.2405 81.3441,-87.7076 90.6028,-84.2044"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="92.0654,-87.3932 100.18,-80.5807 89.5882,-80.8461 92.0654,-87.3932"/>
+</g>
+<!-- 8&#45;&gt;17 -->
+<g id="edge29" class="edge"><title>8&#45;&gt;17</title>
+<path fill="none" stroke="red" stroke-width="2" d="M63.6251,-119.795C73.2537,-124.132 84.1417,-129.037 94.724,-133.804"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="93.3504,-137.024 103.906,-137.939 96.2254,-130.641 93.3504,-137.024"/>
+</g>
+<!-- 22 -->
+<g id="node23" class="node"><title>22</title>
+<path fill="none" stroke="#80d856" stroke-width="2" d="M272,-166C272,-166 238,-166 238,-166 232,-166 226,-160 226,-154 226,-154 226,-142 226,-142 226,-136 232,-130 238,-130 238,-130 272,-130 272,-130 278,-130 284,-136 284,-142 284,-142 284,-154 284,-154 284,-160 278,-166 272,-166"/>
+<text text-anchor="middle" x="255" y="-145.5" font-family="sans" font-size="10.00">seqtk_r1</text>
+</g>
+<!-- 8&#45;&gt;22 -->
+<g id="edge37" class="edge"><title>8&#45;&gt;22</title>
+<path fill="none" stroke="red" stroke-width="2" d="M63.6257,-109.172C95.4411,-112.774 146.554,-119.42 190,-129 198.542,-130.883 207.61,-133.308 216.151,-135.79"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="215.288,-139.185 225.872,-138.702 217.297,-132.48 215.288,-139.185"/>
+</g>
+<!-- 9 -->
+<g id="node10" class="node"><title>9</title>
+<path fill="none" stroke="#d86656" stroke-width="2" d="M969.5,-339C969.5,-339 922.5,-339 922.5,-339 916.5,-339 910.5,-333 910.5,-327 910.5,-327 910.5,-315 910.5,-315 910.5,-309 916.5,-303 922.5,-303 922.5,-303 969.5,-303 969.5,-303 975.5,-303 981.5,-309 981.5,-315 981.5,-315 981.5,-327 981.5,-327 981.5,-333 975.5,-339 969.5,-339"/>
+<text text-anchor="middle" x="946" y="-318.5" font-family="sans" font-size="10.00">collectstats</text>
+</g>
+<!-- 9&#45;&gt;4 -->
+<g id="edge10" class="edge"><title>9&#45;&gt;4</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M981.863,-304.175C1025.66,-284.62 1103.61,-255 1174,-255 1174,-255 1174,-255 1436,-255 1502.07,-255 1572.09,-219.305 1612.83,-194.453"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1614.92,-197.276 1621.56,-189.02 1611.22,-191.333 1614.92,-197.276"/>
+</g>
+<!-- 10&#45;&gt;4 -->
+<g id="edge9" class="edge"><title>10&#45;&gt;4</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M1574.01,-171C1582.09,-171 1591.25,-171 1600.32,-171"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="1600.44,-174.5 1610.44,-171 1600.44,-167.5 1600.44,-174.5"/>
+</g>
+<!-- 11 -->
+<g id="node12" class="node"><title>11</title>
+<path fill="none" stroke="#d8d356" stroke-width="2" d="M1337.5,-189C1337.5,-189 1260.5,-189 1260.5,-189 1254.5,-189 1248.5,-183 1248.5,-177 1248.5,-177 1248.5,-165 1248.5,-165 1248.5,-159 1254.5,-153 1260.5,-153 1260.5,-153 1337.5,-153 1337.5,-153 1343.5,-153 1349.5,-159 1349.5,-165 1349.5,-165 1349.5,-177 1349.5,-177 1349.5,-183 1343.5,-189 1337.5,-189"/>
+<text text-anchor="middle" x="1299" y="-168.5" font-family="sans" font-size="10.00">genotype_scatter</text>
+</g>
+<!-- 11&#45;&gt;5 -->
+<g id="edge11" class="edge"><title>11&#45;&gt;5</title>
+<path fill="none" stroke="red" stroke-width="2" d="M1349.52,-171C1357.98,-171 1366.85,-171 1375.52,-171"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="1375.58,-174.5 1385.58,-171 1375.58,-167.5 1375.58,-174.5"/>
+</g>
+<!-- 12 -->
+<g id="node13" class="node"><title>12</title>
+<path fill="none" stroke="#56d8b9" stroke-width="2" d="M362,-220C362,-220 332,-220 332,-220 326,-220 320,-214 320,-208 320,-208 320,-196 320,-196 320,-190 326,-184 332,-184 332,-184 362,-184 362,-184 368,-184 374,-190 374,-196 374,-196 374,-208 374,-208 374,-214 368,-220 362,-220"/>
+<text text-anchor="middle" x="347" y="-199.5" font-family="sans" font-size="10.00">sickle</text>
+</g>
+<!-- 12&#45;&gt;6 -->
+<g id="edge12" class="edge"><title>12&#45;&gt;6</title>
+<path fill="none" stroke="red" stroke-width="2" d="M355.759,-220.246C371.742,-257.833 408.42,-344.088 427.3,-388.485"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="424.127,-389.968 431.261,-397.801 430.569,-387.228 424.127,-389.968"/>
+</g>
+<!-- 13 -->
+<g id="node14" class="node"><title>13</title>
+<path fill="none" stroke="#566bd8" stroke-width="2" d="M715.5,-442C715.5,-442 656.5,-442 656.5,-442 650.5,-442 644.5,-436 644.5,-430 644.5,-430 644.5,-418 644.5,-418 644.5,-412 650.5,-406 656.5,-406 656.5,-406 715.5,-406 715.5,-406 721.5,-406 727.5,-412 727.5,-418 727.5,-418 727.5,-430 727.5,-430 727.5,-436 721.5,-442 715.5,-442"/>
+<text text-anchor="middle" x="686" y="-421.5" font-family="sans" font-size="10.00">mapped_num</text>
+</g>
+<!-- 13&#45;&gt;9 -->
+<g id="edge19" class="edge"><title>13&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M727.589,-424.716C767.09,-423.803 827.754,-418.028 874,-394 895.108,-383.033 913.641,-363.429 926.474,-347.297"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="929.343,-349.307 932.649,-339.241 923.788,-345.048 929.343,-349.307"/>
+</g>
+<!-- 14&#45;&gt;9 -->
+<g id="edge13" class="edge"><title>14&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M596.093,-460.754C662.378,-469.925 788.978,-477.536 874,-421 900.839,-403.153 920.762,-371.448 932.565,-348.513"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="935.831,-349.803 937.122,-339.287 929.555,-346.703 935.831,-349.803"/>
+</g>
+<!-- 15 -->
+<g id="node16" class="node"><title>15</title>
+<path fill="none" stroke="#d8ac56" stroke-width="2" d="M851,-258C851,-258 799,-258 799,-258 793,-258 787,-252 787,-246 787,-246 787,-234 787,-234 787,-228 793,-222 799,-222 799,-222 851,-222 851,-222 857,-222 863,-228 863,-234 863,-234 863,-246 863,-246 863,-252 857,-258 851,-258"/>
+<text text-anchor="middle" x="825" y="-237.5" font-family="sans" font-size="10.00">unique_num</text>
+</g>
+<!-- 15&#45;&gt;9 -->
+<g id="edge17" class="edge"><title>15&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M859.407,-258.005C864.367,-260.904 869.365,-263.955 874,-267 887.776,-276.051 902.37,-286.911 914.721,-296.51"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="912.849,-299.491 922.875,-302.917 917.174,-293.987 912.849,-299.491"/>
+</g>
+<!-- 16 -->
+<g id="node17" class="node"><title>16</title>
+<path fill="none" stroke="#56d892" stroke-width="2" d="M841.5,-366C841.5,-366 808.5,-366 808.5,-366 802.5,-366 796.5,-360 796.5,-354 796.5,-354 796.5,-342 796.5,-342 796.5,-336 802.5,-330 808.5,-330 808.5,-330 841.5,-330 841.5,-330 847.5,-330 853.5,-336 853.5,-342 853.5,-342 853.5,-354 853.5,-354 853.5,-360 847.5,-366 841.5,-366"/>
+<text text-anchor="middle" x="825" y="-345.5" font-family="sans" font-size="10.00">covstats</text>
+</g>
+<!-- 16&#45;&gt;9 -->
+<g id="edge16" class="edge"><title>16&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M853.6,-341.738C867.455,-338.594 884.587,-334.707 900.261,-331.151"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="901.323,-334.499 910.3,-328.873 899.774,-327.673 901.323,-334.499"/>
+</g>
+<!-- 17&#45;&gt;9 -->
+<g id="edge18" class="edge"><title>17&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M181.908,-137.957C195.445,-131.782 211.159,-125.343 226,-121 277.824,-105.833 292.002,-102 346,-102 346,-102 346,-102 687,-102 770.539,-102 808.286,-69.4209 874,-121 888.028,-132.01 921.442,-240.743 936.9,-293.102"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="933.565,-294.168 939.741,-302.776 940.282,-292.195 933.565,-294.168"/>
+</g>
+<!-- 17&#45;&gt;21 -->
+<g id="edge34" class="edge"><title>17&#45;&gt;21</title>
+<path fill="none" stroke="red" stroke-width="2" d="M187.756,-173.785C197.183,-177.8 207.137,-182.04 216.382,-185.978"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="215.137,-189.252 225.709,-189.95 217.88,-182.811 215.137,-189.252"/>
+</g>
+<!-- 17&#45;&gt;22 -->
+<g id="edge36" class="edge"><title>17&#45;&gt;22</title>
+<path fill="none" stroke="red" stroke-width="2" d="M187.756,-152.907C196.886,-152.231 206.508,-151.518 215.504,-150.852"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="215.995,-154.325 225.709,-150.096 215.478,-147.344 215.995,-154.325"/>
+</g>
+<!-- 18 -->
+<g id="node19" class="node"><title>18</title>
+<path fill="none" stroke="#d8c356" stroke-width="2" d="M862,-312C862,-312 788,-312 788,-312 782,-312 776,-306 776,-300 776,-300 776,-288 776,-288 776,-282 782,-276 788,-276 788,-276 862,-276 862,-276 868,-276 874,-282 874,-288 874,-288 874,-300 874,-300 874,-306 868,-312 862,-312"/>
+<text text-anchor="middle" x="825" y="-291.5" font-family="sans" font-size="10.00">usable_basenum</text>
+</g>
+<!-- 18&#45;&gt;9 -->
+<g id="edge15" class="edge"><title>18&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M874.059,-304.904C882.775,-306.882 891.832,-308.937 900.442,-310.89"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="899.771,-314.327 910.298,-313.126 901.32,-307.5 899.771,-314.327"/>
+</g>
+<!-- 19 -->
+<g id="node20" class="node"><title>19</title>
+<path fill="none" stroke="#d89c56" stroke-width="2" d="M727.5,-388C727.5,-388 644.5,-388 644.5,-388 638.5,-388 632.5,-382 632.5,-376 632.5,-376 632.5,-364 632.5,-364 632.5,-358 638.5,-352 644.5,-352 644.5,-352 727.5,-352 727.5,-352 733.5,-352 739.5,-358 739.5,-364 739.5,-364 739.5,-376 739.5,-376 739.5,-382 733.5,-388 727.5,-388"/>
+<text text-anchor="middle" x="686" y="-367.5" font-family="sans" font-size="10.00">mapped_basenum</text>
+</g>
+<!-- 19&#45;&gt;9 -->
+<g id="edge14" class="edge"><title>19&#45;&gt;9</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M739.628,-380.915C777.914,-386.603 830.453,-389.679 874,-375 891.379,-369.142 907.872,-357.149 920.58,-345.949"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="922.99,-348.488 927.978,-339.141 918.25,-343.338 922.99,-348.488"/>
+</g>
+<!-- 20 -->
+<g id="node21" class="node"><title>20</title>
+<path fill="none" stroke="#56b1d8" stroke-width="2" d="M1199.5,-189C1199.5,-189 1150.5,-189 1150.5,-189 1144.5,-189 1138.5,-183 1138.5,-177 1138.5,-177 1138.5,-165 1138.5,-165 1138.5,-159 1144.5,-153 1150.5,-153 1150.5,-153 1199.5,-153 1199.5,-153 1205.5,-153 1211.5,-159 1211.5,-165 1211.5,-165 1211.5,-177 1211.5,-177 1211.5,-183 1205.5,-189 1199.5,-189"/>
+<text text-anchor="middle" x="1175" y="-168.5" font-family="sans" font-size="10.00">gvcf_gather</text>
+</g>
+<!-- 20&#45;&gt;11 -->
+<g id="edge21" class="edge"><title>20&#45;&gt;11</title>
+<path fill="none" stroke="red" stroke-width="2" d="M1211.62,-171C1219.89,-171 1228.93,-171 1237.94,-171"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="1238.06,-174.5 1248.06,-171 1238.06,-167.5 1238.06,-174.5"/>
+</g>
+<!-- 21&#45;&gt;12 -->
+<g id="edge23" class="edge"><title>21&#45;&gt;12</title>
+<path fill="none" stroke="red" stroke-width="2" d="M284.477,-202C292.443,-202 301.211,-202 309.57,-202"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="309.847,-205.5 319.847,-202 309.847,-198.5 309.847,-205.5"/>
+</g>
+<!-- 22&#45;&gt;12 -->
+<g id="edge22" class="edge"><title>22&#45;&gt;12</title>
+<path fill="none" stroke="red" stroke-width="2" d="M284.477,-165.086C292.974,-170.184 302.384,-175.83 311.236,-181.142"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="309.472,-184.165 319.847,-186.308 313.073,-178.162 309.472,-184.165"/>
+</g>
+<!-- 23&#45;&gt;13 -->
+<g id="edge24" class="edge"><title>23&#45;&gt;13</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M578.277,-388.693C594.402,-394.028 615.583,-401.035 634.821,-407.399"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="633.778,-410.741 644.372,-410.559 635.977,-404.095 633.778,-410.741"/>
+</g>
+<!-- 23&#45;&gt;19 -->
+<g id="edge32" class="edge"><title>23&#45;&gt;19</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M578.277,-378.024C590.945,-377.072 606.733,-375.885 622.248,-374.718"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="622.66,-378.197 632.369,-373.957 622.135,-371.217 622.66,-378.197"/>
+</g>
+<!-- 24 -->
+<g id="node25" class="node"><title>24</title>
+<path fill="none" stroke="#ced856" stroke-width="2" d="M703.5,-269C703.5,-269 668.5,-269 668.5,-269 662.5,-269 656.5,-263 656.5,-257 656.5,-257 656.5,-245 656.5,-245 656.5,-239 662.5,-233 668.5,-233 668.5,-233 703.5,-233 703.5,-233 709.5,-233 715.5,-239 715.5,-245 715.5,-245 715.5,-257 715.5,-257 715.5,-263 709.5,-269 703.5,-269"/>
+<text text-anchor="middle" x="686" y="-248.5" font-family="sans" font-size="10.00">markdup</text>
+</g>
+<!-- 23&#45;&gt;24 -->
+<g id="edge39" class="edge"><title>23&#45;&gt;24</title>
+<path fill="none" stroke="red" stroke-width="2" d="M565.94,-361.809C581.1,-342.614 606.583,-312.014 632,-289 637.244,-284.252 643.086,-279.557 648.921,-275.174"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="651.371,-277.719 657.395,-269.003 647.251,-272.06 651.371,-277.719"/>
+</g>
+<!-- 24&#45;&gt;15 -->
+<g id="edge26" class="edge"><title>24&#45;&gt;15</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M715.72,-248.694C733.44,-247.271 756.595,-245.412 776.943,-243.778"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="777.289,-247.262 786.977,-242.973 776.729,-240.284 777.289,-247.262"/>
+</g>
+<!-- 24&#45;&gt;16 -->
+<g id="edge27" class="edge"><title>24&#45;&gt;16</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M713.281,-269.024C721.934,-275.173 731.51,-282.214 740,-289 756.722,-302.366 758.571,-308.57 776,-321 779.69,-323.632 783.66,-326.215 787.679,-328.677"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="786.072,-331.792 796.466,-333.845 789.621,-325.759 786.072,-331.792"/>
+</g>
+<!-- 24&#45;&gt;18 -->
+<g id="edge31" class="edge"><title>24&#45;&gt;18</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M715.72,-260.014C730.417,-264.627 748.853,-270.414 766.324,-275.897"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="765.313,-279.248 775.902,-278.904 767.409,-272.569 765.313,-279.248"/>
+</g>
+<!-- 27 -->
+<g id="node28" class="node"><title>27</title>
+<path fill="none" stroke="#56d882" stroke-width="2" d="M966.5,-189C966.5,-189 925.5,-189 925.5,-189 919.5,-189 913.5,-183 913.5,-177 913.5,-177 913.5,-165 913.5,-165 913.5,-159 919.5,-153 925.5,-153 925.5,-153 966.5,-153 966.5,-153 972.5,-153 978.5,-159 978.5,-165 978.5,-165 978.5,-177 978.5,-177 978.5,-183 972.5,-189 966.5,-189"/>
+<text text-anchor="middle" x="946" y="-168.5" font-family="sans" font-size="10.00">printreads</text>
+</g>
+<!-- 24&#45;&gt;27 -->
+<g id="edge41" class="edge"><title>24&#45;&gt;27</title>
+<path fill="none" stroke="red" stroke-width="2" d="M715.807,-237.31C733.013,-229.486 755.452,-219.891 776,-213 818.602,-198.714 868.7,-186.859 903.231,-179.428"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="904.366,-182.765 913.422,-177.266 902.913,-175.918 904.366,-182.765"/>
+</g>
+<!-- 28 -->
+<g id="node29" class="node"><title>28</title>
+<path fill="none" stroke="#56d8a9" stroke-width="2" d="M844.5,-166C844.5,-166 805.5,-166 805.5,-166 799.5,-166 793.5,-160 793.5,-154 793.5,-154 793.5,-142 793.5,-142 793.5,-136 799.5,-130 805.5,-130 805.5,-130 844.5,-130 844.5,-130 850.5,-130 856.5,-136 856.5,-142 856.5,-142 856.5,-154 856.5,-154 856.5,-160 850.5,-166 844.5,-166"/>
+<text text-anchor="middle" x="825" y="-145.5" font-family="sans" font-size="10.00">baserecal</text>
+</g>
+<!-- 24&#45;&gt;28 -->
+<g id="edge43" class="edge"><title>24&#45;&gt;28</title>
+<path fill="none" stroke="red" stroke-width="2" d="M708.541,-232.963C726.32,-218.285 752.374,-197.251 776,-180 779.694,-177.303 783.598,-174.549 787.519,-171.845"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="789.75,-174.561 796.056,-166.047 785.817,-168.771 789.75,-174.561"/>
+</g>
+<!-- 25 -->
+<g id="node26" class="node"><title>25</title>
+<path fill="none" stroke="#56c1d8" stroke-width="2" d="M702,-334C702,-334 670,-334 670,-334 664,-334 658,-328 658,-322 658,-322 658,-310 658,-310 658,-304 664,-298 670,-298 670,-298 702,-298 702,-298 708,-298 714,-304 714,-310 714,-310 714,-322 714,-322 714,-328 708,-334 702,-334"/>
+<text text-anchor="middle" x="686" y="-313.5" font-family="sans" font-size="10.00">genome</text>
+</g>
+<!-- 25&#45;&gt;16 -->
+<g id="edge28" class="edge"><title>25&#45;&gt;16</title>
+<path fill="none" stroke="grey" stroke-width="2" d="M714.067,-322.322C734.717,-327.146 763.414,-333.849 786.31,-339.197"/>
+<polygon fill="grey" stroke="grey" stroke-width="2" points="785.515,-342.605 796.049,-341.471 787.107,-335.788 785.515,-342.605"/>
+</g>
+<!-- 26 -->
+<g id="node27" class="node"><title>26</title>
+<path fill="none" stroke="#56d85b" stroke-width="2" d="M1085.5,-189C1085.5,-189 1034.5,-189 1034.5,-189 1028.5,-189 1022.5,-183 1022.5,-177 1022.5,-177 1022.5,-165 1022.5,-165 1022.5,-159 1028.5,-153 1034.5,-153 1034.5,-153 1085.5,-153 1085.5,-153 1091.5,-153 1097.5,-159 1097.5,-165 1097.5,-165 1097.5,-177 1097.5,-177 1097.5,-183 1091.5,-189 1085.5,-189"/>
+<text text-anchor="middle" x="1060" y="-168.5" font-family="sans" font-size="10.00">gvcf_scatter</text>
+</g>
+<!-- 26&#45;&gt;20 -->
+<g id="edge33" class="edge"><title>26&#45;&gt;20</title>
+<path fill="none" stroke="red" stroke-width="2" d="M1097.69,-171C1107.35,-171 1117.9,-171 1127.98,-171"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="1128.27,-174.5 1138.27,-171 1128.27,-167.5 1128.27,-174.5"/>
+</g>
+<!-- 27&#45;&gt;26 -->
+<g id="edge40" class="edge"><title>27&#45;&gt;26</title>
+<path fill="none" stroke="red" stroke-width="2" d="M978.795,-171C989.193,-171 1000.97,-171 1012.23,-171"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="1012.38,-174.5 1022.38,-171 1012.38,-167.5 1012.38,-174.5"/>
+</g>
+<!-- 28&#45;&gt;27 -->
+<g id="edge42" class="edge"><title>28&#45;&gt;27</title>
+<path fill="none" stroke="red" stroke-width="2" d="M856.645,-153.923C870.746,-156.648 887.698,-159.925 902.967,-162.876"/>
+<polygon fill="red" stroke="red" stroke-width="2" points="902.73,-166.395 913.213,-164.856 904.059,-159.522 902.73,-166.395"/>
+</g>
+</g>
+</svg>