Merge pull request #10 from LUMC/develop
Full rewrite of the pipeline
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- tests/data/config/invalid_config_baitsfile_only.json 16 additions, 0 deletionstests/data/config/invalid_config_baitsfile_only.json
- tests/data/config/invalid_config_fake_ref.json 15 additions, 0 deletionstests/data/config/invalid_config_fake_ref.json
- tests/data/config/invalid_config_no_ref.json 14 additions, 0 deletionstests/data/config/invalid_config_no_ref.json
- tests/data/config/invalid_config_two_samples.json 25 additions, 0 deletionstests/data/config/invalid_config_two_samples.json
- tests/data/config/sample_config.json 15 additions, 0 deletionstests/data/config/sample_config.json
- tests/data/config/sample_config_bed_all.json 16 additions, 0 deletionstests/data/config/sample_config_bed_all.json
- tests/data/config/sample_config_bed_coverage.json 16 additions, 0 deletionstests/data/config/sample_config_bed_coverage.json
- tests/data/config/sample_config_bed_target.json 16 additions, 0 deletionstests/data/config/sample_config_bed_target.json
- tests/data/config/sample_config_multisample.json 26 additions, 0 deletionstests/data/config/sample_config_multisample.json
- tests/data/config/sample_config_refflat.json 16 additions, 0 deletionstests/data/config/sample_config_refflat.json
- tests/data/config/sample_config_restrict_BQSR.json 16 additions, 0 deletionstests/data/config/sample_config_restrict_BQSR.json
- tests/data/config/sample_config_scatter.json 16 additions, 0 deletionstests/data/config/sample_config_scatter.json
- tests/data/config/sample_config_target_baits.json 17 additions, 0 deletionstests/data/config/sample_config_target_baits.json
- tests/data/config/sample_config_targets_only.json 16 additions, 0 deletionstests/data/config/sample_config_targets_only.json
- tests/data/config/sample_config_two_known_vcf.json 15 additions, 0 deletionstests/data/config/sample_config_two_known_vcf.json
- tests/data/config/sample_config_two_readgroup.json 20 additions, 0 deletionstests/data/config/sample_config_two_readgroup.json
- tests/data/config/sample_config_two_samples.json 25 additions, 0 deletionstests/data/config/sample_config_two_samples.json
- tests/data/fastq/README.md 6 additions, 0 deletionstests/data/fastq/README.md
- tests/data/fastq/micro_R1.fq.gz 0 additions, 0 deletionstests/data/fastq/micro_R1.fq.gz
- tests/data/fastq/micro_R2.fq.gz 0 additions, 0 deletionstests/data/fastq/micro_R2.fq.gz
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