Commit 2e20a038 authored by Sander Bollen's avatar Sander Bollen
Browse files

fix chunkfile generation for gather_gvcf

parent e0bd1125
......@@ -383,7 +383,8 @@ rule gvcf_chunkfile:
run:
with open(output.file, "w") as ohandle:
for filename in params.chunkfiles:
ohandle.write(filename + "\n")
corrected = filename.format(sample=wildcards.sample)
ohandle.write(corrected + "\n")
rule gvcf_gather:
"""Gather all GVCF scatters"""
......
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