Commit 160b4e21 authored by van den Berg's avatar van den Berg
Browse files

Make pytest run more reliable

parent 891bd927
......@@ -103,7 +103,7 @@ BASE_BEDS = [basename(x) for x in BEDS]
BASE_REFFLATS = [basename(x) for x in REFFLATS]
def split_genome(ref, approx_n_chunks=100):
def split_genome(ref, approx_n_chunks=2):
"""
Split genome in chunks.
......
......@@ -2,3 +2,4 @@ snakemake>=5.2.0
pyfaidx==0.5.0
python>=3.5
click
drmaa
......@@ -3,8 +3,8 @@
snakemake
--use-singularity
--singularity-prefix /tmp/singularity
--singularity-args ' --bind /tmp'
--jobs 10 -w 120
--singularity-args ' --cleanenv --bind /tmp'
--jobs 1 -w 120
-r -p -s Snakefile
--config
REFERENCE=tests/data/ref.fa
......
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