Only include a single test

.github/workflows/ci.yml

@@ -14,34 +14,7 @@ jobs:
     strategy:
       matrix:
         test:
-          - sanity-snakemake
-          - sanity-snakemake-lint
-          - sanity-singularity
-          - sanity-no-reference
-          - sanity-reference-does-not-exist
-          - sanity-baits-only
-          - sanity-targets-only
-          - sanity-samples-overlapping-name
-          - sanity-multisample
-
-          - dry-run-vanilla
-          - dry-run-target-baits
-          - dry-run-bed-coverage
-          - dry-run-multisample
-
           - integration-vanilla
-          - integration-small-scatter
-          - integration-refflat
-          - integration-all-on-target
-          - integration-gene-bedfile
-          - integration-two-known-sites
-          - integration-two-readgroups
-          - integration-two-samples
-          - integration-target-baits
-          - integration-bed-coverage
-          - integration-restrict-BQSR
-          - integration-targets-only
-          - integration-multisample
     steps:
     - uses: actions/checkout@v2
 
@@ -61,7 +34,7 @@ jobs:
       run: >-
         pytest --keep-workflow-wd-on-fail --tag ${{ matrix.test }} --symlink tests/
 
-    - name: Check job stderr messages in case of failure
+    - name: Check pipeline stderr messages in case of failure
       if: ${{ failure() }}
       run: >-
         bash -c '
@@ -69,7 +42,7 @@ jobs:
           echo $file; cat $file
         done
         '
-    - name: Check job stdout messages in case of failure
+    - name: Check pipeline stdout messages in case of failure
       if: ${{ failure() }}
       run: >-
         bash -c '
@@ -77,3 +50,11 @@ jobs:
           echo $file; cat $file
         done
         '
+    - name: Check all job log files in case of failure
+      if: ${{ failure() }}
+      run: >-
+        bash -c '
+        for file in $(find /tmp/pytest_workflow_*/log/ -type f); do
+          echo $file; cat $file
+        done
+        '