Commit 1030a727 authored by van den Berg's avatar van den Berg
Browse files

Only include a single test

parent 6c6b7a26
Pipeline #5297 failed with stages
in 29 seconds
......@@ -14,34 +14,7 @@ jobs:
strategy:
matrix:
test:
- sanity-snakemake
- sanity-snakemake-lint
- sanity-singularity
- sanity-no-reference
- sanity-reference-does-not-exist
- sanity-baits-only
- sanity-targets-only
- sanity-samples-overlapping-name
- sanity-multisample
- dry-run-vanilla
- dry-run-target-baits
- dry-run-bed-coverage
- dry-run-multisample
- integration-vanilla
- integration-small-scatter
- integration-refflat
- integration-all-on-target
- integration-gene-bedfile
- integration-two-known-sites
- integration-two-readgroups
- integration-two-samples
- integration-target-baits
- integration-bed-coverage
- integration-restrict-BQSR
- integration-targets-only
- integration-multisample
steps:
- uses: actions/checkout@v2
......@@ -61,7 +34,7 @@ jobs:
run: >-
pytest --keep-workflow-wd-on-fail --tag ${{ matrix.test }} --symlink tests/
- name: Check job stderr messages in case of failure
- name: Check pipeline stderr messages in case of failure
if: ${{ failure() }}
run: >-
bash -c '
......@@ -69,7 +42,7 @@ jobs:
echo $file; cat $file
done
'
- name: Check job stdout messages in case of failure
- name: Check pipeline stdout messages in case of failure
if: ${{ failure() }}
run: >-
bash -c '
......@@ -77,3 +50,11 @@ jobs:
echo $file; cat $file
done
'
- name: Check all job log files in case of failure
if: ${{ failure() }}
run: >-
bash -c '
for file in $(find /tmp/pytest_workflow_*/log/ -type f); do
echo $file; cat $file
done
'
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