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Commit 08d2bb1c authored by Sander Bollen's avatar Sander Bollen
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using vtools container for collectstats due to click dependency

parent 96b8a6d8
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......@@ -588,7 +588,7 @@ rule fastqc_stats:
postqc_r1="{sample}/pre_process/postqc_fastqc/{sample}.cutadapt_R1_fastqc.zip",
postqc_r2="{sample}/pre_process/postqc_fastqc/{sample}.cutadapt_R2_fastqc.zip",
sc=fqpy
singularity: "docker://python:3.6-slim"
singularity: "docker://quay.io/biocontainers/vtools:1.0.0--py37h3010b51_0"
conda: "envs/collectstats.yml"
output:
"{sample}/pre_process/fastq_stats.json"
......
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