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{
"samples": {
"micro": {
"libraries": {
"lib_01": {
"R1": "tests/data/fastq/micro_R1.fq.gz",
"R2": "tests/data/fastq/micro_R2.fq.gz"
"reference":"tests/data/reference/ref.fa",
"dbsnp": "tests/data/reference/database.vcf.gz",
"known_sites": ["tests/data/reference/database.vcf.gz"],
"refflat": "tests/data/reference/chrM_refFlat.txt"