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sample_config_refflat.json 409 B
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{
  "samples": {
    "micro": {
      "libraries": {
        "lib_01": {
        "R1": "tests/data/fastq/micro_R1.fq.gz",
        "R2": "tests/data/fastq/micro_R2.fq.gz"
  "reference":"tests/data/reference/ref.fa",
  "dbsnp": "tests/data/reference/database.vcf.gz",
  "known_sites": ["tests/data/reference/database.vcf.gz"],
  "refflat": "tests/data/reference/chrM_refFlat.txt"