* The -c/--stuttermark-column option of Allelefinder was not filtering
out the non-ALLELE sequences as it was supposed to. (This issue was
introduced in ce7f34fb, in which a bug was fixed that caused this
option to filter all sequences, including the ones marked with ALLELE.
So it turns out this option has been broken since 732e83ba.)
* Allelefinder will no longer reject a marker based on the number of
reads of 'Other sequences'.
* Adjusted sequence alignment parameters for mtDNA sequences to produce
allele names that more closely follow historical mtDNA mutation