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Hoogenboom, Jerry authored
Updated Stuttermark to v1.5. WARNING: This version of Stuttermark is INCOMPATIBLE with output from previous versions of FDSTools and TSSV. Introducing TSSV-Lite * New tool tssv acts as a wrapper around TSSV-Lite (tssvl). Its primary purpose is to allow running TSSV-Lite without having to convert the FDSTools library to TSSV format, and to offer allelename output. Like all other tools in FDSTools, it also works with TSSV library files but its allele name generation capabilities are limited in that case. Changed: * TSSV-Lite and the new TSSV tool in FDSTools have two columns renamed w.r.t. the original TSSV program: 'name' has been changed to 'marker', and 'allele' has been changed to 'sequence'. All tools in FDSTools have been updated to use the new column names. This change affects Allelefinder, BGCorrect, BGEstimate, BGHomRaw, BGHomStats, BGPredict, Blame, Samplestats, Samplevis, Stuttermark, Stuttermodel, and Seqconvert. Note that this change wi...
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