Changed to the beamer template.

beamerthemelumc.sty:
- The LUMC style sheet, it handles all layout and provides two commands:
  - \bodytemplate makes the title sheet and switches to the body layout.
  - \lastpagetemplate alters the head line with two more logos.

presentation.tex:
- Example presentation.

Makefile:
- Added more clean up functionality.

Makefile

@@ -28,7 +28,8 @@ release: $(SRC) clean
 	rm -f $(SRC).ps
 
 clean:
-	rm -f *.aux $(SRC).blg $(SRC).dvi $(SRC).log
+	rm -f *.aux $(SRC).blg $(SRC).dvi $(SRC).log $(SRC).nav $(SRC).out \
+    $(SRC).toc $(SRC).snm
 
 distclean: clean
 	rm -f $(SRC).ps $(SRC).pdf

beamerthemelumc.sty

+% Copyright 2011 by Jeroen F. J. Laros
+%
+% This file may be distributed and/or modified
+%
+% 1. under the LaTeX Project Public License and/or
+% 2. under the GNU Public License.
+%
+% See the file doc/licenses/LICENSE for more details.
+
+\ProvidesPackageRCS $Header: /svnroot/presentation/trunk/beamerthemelumc.sty,v 1.0 2011/03/02 $
+
+\mode<presentation>
+
+% For the footer.
+\usepackage{tabularx}
+
+% Select a nicer font.
+\usepackage{newcent}
+\renewcommand{\sfdefault}{pnc}
+
+% Custom colours (use the gimp colour picker and divide by 255).
+\definecolor{LUMCBlue}{rgb}{0, 0.10980, 0.37647}
+\definecolor{ULBlue}{rgb}{0.06274, 0.07843, 0.38823}
+
+% Disable the navigation bar.
+\usenavigationsymbolstemplate{}
+
+% Set default colours.
+\setbeamercolor{structure}{fg = white}
+\setbeamercolor{normal text}{fg = white}
+\setbeamercolor{frametitle}{fg = black}
+
+\setbeamertemplate{items}[circle]
+
+%
+% Settings for the title page.
+%
+
+% The header of the title page.
+\providecommand{\titletemplate}{
+  \setbeamertemplate{headline}{
+    \colorbox{LUMCBlue}{
+      \begin{tabularx}{0.98\textwidth}{X}
+        \vspace{-0.3cm} % Space above the logo.
+        \hfill
+        \includegraphics[scale = 0.25, angle = 270]{lumc_logo}
+        \hfill \phantom{.}
+        \vspace{0.1cm} % Space above the logo.
+      \end{tabularx}
+    }
+  }
+}
+
+% The footer of the title page.
+\setbeamertemplate{footline}{
+  \colorbox{ULBlue}{
+    \begin{tabularx}{0.98\textwidth}{X}
+      \vspace{0.05cm}    % Space above the logo.
+      \hfill
+      \includegraphics[scale = 0.25]{ul_logo}
+      \hfill \phantom{.}
+      \vspace{0.1cm}    % Space below the logo.
+    \end{tabularx}
+  }
+}
+
+%
+% Settings for the body.
+%
+
+% The header of the body.
+\setbeamertemplate{headline}{
+  \colorbox{white}{\color{LUMCBlue}
+    \begin{tabularx}{0.98\textwidth}{ll}
+      \includegraphics[scale = 0.25]{lumc_logo_small} & 
+      \hspace{0.8cm}    % Space between the logo and the title of the section.
+      {\normalsize {\bf \insertsection}}
+      \raisebox{0.9cm}{\phantom{.}}
+    \end{tabularx}
+  }
+}
+
+% Switch to the normal layout.
+\providecommand{\bodytemplate}{
+  % The title page.
+  {
+    \titletemplate
+    \begin{frame}
+      \vspace{1.5cm}
+  
+      \begin{center}
+        \color{black} {\Large {\bf \inserttitle}}
+  
+        \vspace{2.3cm}
+        {\bf 
+          {\scriptsize
+            \color{LUMCBlue} 
+            \insertauthor
+            \smallskip
+  
+            \myGroup
+            \smallskip
+  
+            \myDepartment
+  
+            \vspace{-0.1cm}
+            \myCenter
+          }
+        }
+      \end{center}
+    \end{frame}
+  }
+
+  % Set the background colour.
+  \beamersetaveragebackground{LUMCBlue}
+
+  % Reset the frame counter.
+  \setcounter{framenumber}{0}
+
+  % The footer of the body.
+  \setbeamertemplate{footline}{
+    \colorbox{white}{\color{LUMCBlue}
+      \begin{tabularx}{0.98\textwidth}{XXX}
+        \\ [-3ex]       % Space above the footer line.
+        \myConference & 
+        \hfill \insertframenumber/\inserttotalframenumber 
+          \hfill \phantom{.} & 
+        \hfill \myDate 
+        \\ [-1ex]       % Space below the footer line.
+      \end{tabularx}
+    }
+  }
+}
+
+\providecommand{\lastpagetemplate}{
+  % The header of the body.
+  \setbeamertemplate{headline}{
+    \colorbox{white}{\color{LUMCBlue}
+      \begin{tabularx}{0.98\textwidth}{llXX}
+        \includegraphics[scale = 0.25]{lumc_logo_small} & 
+        \hspace{0.8cm}    % Space between the logo and the title of the section.
+        {\normalsize {\bf \insertsection}} & 
+        \hfill
+        \lastCenterLogo
+        \hfill \phantom{.} &
+        \hfill
+        \lastRightLogo
+        \hfill
+      \end{tabularx}
+    }
+  }
+}
+
+\mode
+<all>

presentation.tex

-% LUMC presentation template by J. F. J. Laros.
-% Last alteration on 20-02-2011.
-%
-% The packages texlive-latex-recommended, texlive-latex-base and
-%   texlive-latex-extra should be installed.
-%
+\documentclass[slidestop]{beamer}
 
-% Alter these four lines for a new presentation.
-\providecommand{\me}{Jeroen F. J. Laros}
+\title{\LaTeX\ Presentation Template}
+\providecommand{\myConference}{Work discussion}
+\providecommand{\myDate}{Thursday, 24 February 2011}
+\author{Jeroen F. J. Laros}
 \providecommand{\myGroup}{Leiden Genome Technology Center}
 \providecommand{\myDepartment}{Department of Human Genetics}
 \providecommand{\myCenter}{Center for Human and Clinical Genetics}
-\providecommand{\myTitle}{\LaTeX \ Presentation Template}
-\providecommand{\myConference}{Work discussion}
-\providecommand{\myDate}{Thursday, 24 February 2011}
-
-% Now go to %%% BEGIN PRESENTATION %%%
-
-\documentclass[a4, portrait]{seminar}
-
-\usepackage{semcolor} % For coloured text.
-\usepackage{slidesec} % For section headings.
-\usepackage{newcent}  % This is a better font for presentations.
-\usepackage{listings}
-\input{seminar.bug}
-
-\usepackage{graphicx} % For pictures.
-\usepackage{fancybox} % For the background picture.
-\usepackage[labelfont={color=white}, textfont={color=white}]{caption}
-
-\definecolor{Blue}{rgb}{0.,0.11372,0.37647} % Custom LUMC color
-
-\renewcommand{\labelitemi}{\textcolor{white}{$\bullet$}} % Make the bullets for
-\renewcommand{\labelitemii}{\textcolor{white}{--}}       % itemising white.
-\renewcommand{\labelitemiii}{\textcolor{white}{$\ast$}}
-\renewcommand{\labelitemiv}{\textcolor{white}{$\circ$}}
-\renewcommand{\labelenumi}{\textcolor{white}{\arabic{enumi}.}}
-
-\newcommand{\bt}[1]{\texttt{\textbf{#1}}}
-
-\lstdefinelanguage{BNF}{
-  sensitive = true,
-  otherkeywords = {-,>,|,',`,?,(,)},
-  morestring = [b][keywordstyle]',
-  morecomment = [l]{\#},
-}
-
-\lstset{
-  language = Python,
-  basicstyle = \footnotesize,
-  lineskip = -0.5ex,
-  frame = shadowbox,
-  rulesepcolor = \color{black},
-  captionpos = b,
-  numbers = left,
-  numbersep = -1em,
-  numberstyle = \tiny
-}
-
-\newslideframe{TITLE}{ % Template for the title.
-  \boxput{
-    \rput(0, 0){\includegraphics[angle=90, scale=.485]{bg}}
-  }{#1}
-}
-
-\newslideframe{PRES}{ % Template for the body.
-  \boxput{
-    \rput(0, 0){\includegraphics[angle=90, scale=.485]{bg2}}
-  }{
-    \textcolor{Blue}{
-      \rput[l]{90}(8.57, -1.5){\scriptsize{\myConference}} 
-      \rput[c]{90}(8.57, 5.35){\scriptsize{\theslide/\pageref{LastPage}}}
-      \rput[r]{90}(8.57, 12.2){\scriptsize{\myDate}}
-    }
-    \white #1
+\providecommand{\lastCenterLogo}{
+  \raisebox{-0.1cm}{
+    \includegraphics[scale = 0.055]{lgtc_logo}
   }
 }
-
-\renewcommand{\makeslideheading}[1]{ % Put the slide headings on top.
-  \rput[l](0.2, .40){
-      \textbf{
-        \textcolor{Blue}{#1}
-    }
-  }
-  \newline
+\providecommand{\lastRightLogo}{
+  \includegraphics[scale = 0.1]{nbic_logo} 
 }
 
-\pagestyle{empty}
+\usetheme{lumc}
 
 \begin{document}
 
-\slideframe{TITLE} % Use the title template.
-
-\begin{slide}
-  \setcounter{slide}{0}
-  \vspace*{1.5cm}
+\bodytemplate
+
+% First page of the presentation.
+\section{Introduction}
+\begin{frame}
+ First line.
+
+ \pause
+
+ Second line.
+ \hfill
+\end{frame}
+
+\section{Topic2}
+\begin{frame}
+  \begin{itemize}
+    \item Item 1.
+    \item Item 2.
+    \pause
+    \item Item 3.
+    \pause
+    \begin{itemize}
+      \item Subitem 1.
+    \end{itemize}
+  \end{itemize}
+\end{frame}
+
+\section{Questions?}
+\lastpagetemplate
+\begin{frame}
   \begin{center}
-  {\bf\Large{\myTitle}}\\
-  \vfill
-  \textcolor{Blue}{
-    {\bf
-      \small{\me}\\
-      \small{\myGroup}\\
-      \small{\myDepartment}\\
-      \small{\myCenter}
-    }
-  }
-  \vspace{1.1cm}
-  \end{center}
-\end{slide}
-
-\slideframe{PRES} % Use the body template.
-
-%%% BEGIN PRESENTATION %%%
-
-\begin{slide}
-  \slideheading{Topic 1}
-  Text goes here...
-  \vfill
-\end{slide}
-
-\begin{slide}
-  \slideheading{Topic 1}
-  And more text..
-  \vfill
-\end{slide}
-
-\begin{slide}
-  \slideheading{Topic 2}
-  And yet more text..
-  \vfill
-\end{slide}
-  
-\begin{slide}
-  %\rput(11.4,0.6){\includegraphics[scale=0.1]{Gen2Phen}}
-  \rput(5.4,0.7){\includegraphics[scale=0.07]{lgtc_logo}}
-  \rput(10.6,0.6){\includegraphics[scale=0.1]{nbic_logo}}
-
-  \slideheading{Questions?}
-  \begin{center}
-    Acknowledgements
-    \bigskip
-    \bigskip
-    
-    Some people here.
-
-    \bigskip
-    
-    \bt{https://www.mutalyzer.nl/svn/presentation}
+    Acknowledgements..
   \end{center}
-  \vfill
-  \label{LastPage}
-\end{slide}
+\end{frame}
 
 \end{document}