Makefile:

- Added better handling of bibliography.
- Added support for gnuplot images.

beamerthemelumc.sty:
- Added support for docking text on the bottom of the page (with \vfill).
- Added miscellaneous commands for typesetting, fonts, etc.

Makefile

@@ -5,31 +5,40 @@ LATEX = latex
 BIBTEX = bibtex
 DVIPS = dvips
 PS2PDF = ps2pdf14
+GNUPLOT = gnuplot
 
 PDF = $(addsuffix .pdf, $(basename $(shell grep -l '\\begin{document' *.tex)))
-BIB = $(addsuffix .bbl, $(basename $(shell grep -l '\\cite{' *.tex)))
+BIB = $(addsuffix .bbl, $(basename $(shell grep -l '\\nocite{\|\\cite{' *.tex)))
+EPS = $(addsuffix .eps, $(basename $(shell ls *.gnp)))
 
 
-all: $(BIB) $(PDF)
+all: $(EPS) $(BIB) $(PDF) clean
 
 clean:
-	rm -f *.blg *.log *.nav *.out *.snm *.toc *.dvi *.aux
+	rm -f *.blg *.log *.nav *.out *.snm *.toc *.dvi *.aux *.vrb
 
 release: all clean
 
 distclean: clean
-	rm -f $(BIB) $(PDF)
+	rm -f $(BIB) $(PDF) $(EPS)
 
-%.aux %.dvi: %.tex
-	$(LATEX) $^
-	$(LATEX) $^
+%.aux: %.tex
 	$(LATEX) $^
+	rm $(addsuffix .dvi, $(basename $^))
 
 %.bbl: %.aux
 	$(BIBTEX) $(basename $^)
 
+%.dvi: %.tex
+	$(LATEX) $^
+	$(LATEX) $^
+	$(LATEX) $^
+
 %.ps: %.dvi
 	$(DVIPS) $^ -o $@
 
 %.pdf: %.ps
 	$(PS2PDF) $^
+
+%.eps: %.gnp
+	$(GNUPLOT) < $<

beamerthemelumc.sty

@@ -14,14 +14,25 @@
 % For the footer.
 \usepackage{tabularx}
 
+% Always nice to have.
+\usepackage{multirow}
+\usepackage{multicol}
+\usepackage{ifthen}
+
+% Some defaults for using a bibliography.
+\usepackage{bibentry}
+\setbeamertemplate{bibliography item}[triangle]
+\bibliographystyle{plain}
+
 % Select a nicer font.
 \usepackage{newcent}
 \renewcommand{\sfdefault}{pnc}
+\usepackage{eurosym}
 
 % Package for making graphs and automata.
 \usepackage{gastex}
 % Spaces around `=' break functionality.
-\gasset{Nadjust=w, linecolor=white, linewidth=0.5}
+\gasset{linecolor=white, linewidth=0.5, AHLength=3}
 
 % Custom colours (use the gimp colour picker and divide by 255).
 \definecolor{LUMCBlue}{rgb}{0, 0.11372, 0.38039}
@@ -37,20 +48,35 @@
 
 % Change the bullets in the itemize environment.
 \setbeamertemplate{itemize items}[circle]
+\newcommand{\fakeitem}{\,\ \ \ $\bullet$\ \,}
 
-% Macro for bold text.
-\newcommand{\bt}[1]{\texttt{\textbf{#1}}}
+% Macros for bold text.
+\newcommand{\bt}[1]{\texttt{\textbf{#1}}} % Bold truetype.
+\newcommand{\bs}[1]{\bf{\scriptsize{#1}}} % Bold small.
+\newcommand{\bi}[1]{\textit{\textbf{#1}}} % Bold italic.
+\newcommand{\bsi}[1]{\textit{\textbf{\scriptsize{#1}}}} % Bold italic small.
+\newcommand{\permfoot}[1]{\onslide<1->\bs{#1}}
 
 % Enable numbering of figures and tables.
 \setbeamertemplate{caption}[numbered]
 
-%
+% Put a frame title on the slide.
 \renewcommand{\frametitle}[1]{
   {\it{\textbf{#1}}}
   \bigskip
 
 }
 
+% A filled frame, use this to make use of the \vfill command.
+\newenvironment{fframe}{
+  \begin{frame}
+    \vspace{.15cm}
+    \vbox to 1.15\textheight \bgroup
+}{
+    \egroup
+  \end{frame}
+}
+
 %
 % Settings for displaying code.
 %
@@ -76,6 +102,12 @@
   numberstyle = \tiny
 }
 
+% Define an empty language to use only for typesetting.
+\lstdefinelanguage{none}{}
+
+% Trick to get out of math mode highlighting.
+\newcommand{\rmath}[1]{\phantom{\lstinline!#1!}}
+
 %
 % Settings for the title page.
 %

mkpres.sh

@@ -18,6 +18,8 @@ ln -s $here/lumc_logo_small.eps $1/
 ln -s $here/ul_logo.eps $1/
 ln -s $here/lgtc_logo.eps $1/
 ln -s $here/nbic_logo.eps $1/
+ln -s $here/nwo_logo_en.eps $1/
+ln -s $here/ngi_logo.eps $1/
 ln -s $here/gen2phen_logo.eps $1/
 ln -s $here/Makefile $1/
 ln -s $here/beamerthemelumc.sty $1/

presentation.tex

@@ -9,12 +9,14 @@
 \providecommand{\myCenter}{Center for Human and Clinical Genetics}
 \providecommand{\lastCenterLogo}{
   \raisebox{-0.1cm}{
-    \includegraphics[height = 1cm]{lgtc_logo}
+    %\includegraphics[height = 1cm]{lgtc_logo}
+    %\includegraphics[height = 0.7cm]{ngi_logo}
   }
 }
 \providecommand{\lastRightLogo}{
-  \includegraphics[height = 0.7cm]{nbic_logo}
+  %\includegraphics[height = 0.7cm]{nbic_logo}
   %\includegraphics[height = 0.8cm]{nwo_logo_en}
+  %\hspace{1.5cm}\includegraphics[height = 0.7cm]{gen2phen_logo}
 }
 
 \usetheme{lumc}
@@ -30,13 +32,19 @@
 % First page of the presentation.
 \section{Introduction}
 \begin{frame}
- \frametitle{Title of this frame.}
- First line.
+  \frametitle{Title of this frame.}
+  First line.
+ 
+  \pause
+ 
+  Second line.
+\end{frame}
 
- \pause
+\begin{fframe}
+  \frametitle{Title of this frame.}
 
- Second line.
-\end{frame}
+  \vfill
+\end{fframe}
 
 \section{Topic2}
 \begin{frame}