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Feature motifs

Sander Bollen requested to merge feature-motifs into master

This feature adds a motif finder from a fasta file. It does not take into account ambiguity codes and overlapping matches. It adds a requirement for numpy. It uses array.array('I') in stead of a simple list of tuples to keep the memory footprint small (< 1GB for hg19). It outputs in bed format. To call:

fastools famotif2bed <INPUT_FASTA> <OUTPUT_BED> --motif <sequence_to_be_found>

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