Added new NGS pictures.

809943ac · Laros · c666f139 · 809943ac · 809943ac · 809943ac
Commit 809943ac authored 8 years ago by Laros
--- a/pics/clipping.svg
+++ b/pics/clipping.svg
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   width="210mm"
+   height="297mm"
+   viewBox="0 0 744.09448819 1052.3622047"
+   id="svg2"
+   version="1.1"
+   inkscape:version="0.91 r13725"
+   sodipodi:docname="clipping.svg">
+  <defs
+     id="defs4" />
+  <sodipodi:namedview
+     id="base"
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1.0"
+     inkscape:pageopacity="0.0"
+     inkscape:pageshadow="2"
+     inkscape:zoom="1.979899"
+     inkscape:cx="275.11855"
+     inkscape:cy="927.32925"
+     inkscape:document-units="px"
+     inkscape:current-layer="layer1"
+     showgrid="true"
+     showguides="false"
+     inkscape:snap-grids="true"
+     inkscape:window-width="1598"
+     inkscape:window-height="868"
+     inkscape:window-x="0"
+     inkscape:window-y="0"
+     inkscape:window-maximized="1">
+    <inkscape:grid
+       type="xygrid"
+       id="grid5708" />
+  </sodipodi:namedview>
+  <metadata
+     id="metadata7">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+        <dc:title></dc:title>
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1">
+    <rect
+       style="fill:#ffffff;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-width:0.82568485;stroke-opacity:0.99646648"
+       id="rect5718"
+       width="408.74576"
+       height="10.174315"
+       x="120.62714"
+       y="132.27504" />
+    <rect
+       style="fill:#0000ff;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect4147"
+       width="100"
+       height="10"
+       x="530"
+       y="132.3622" />
+    <rect
+       style="fill:#0000ff;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect4147-3"
+       width="100"
+       height="10"
+       x="20.714285"
+       y="132.3622" />
+    <rect
+       style="fill:#ffffff;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-width:0.71003056;stroke-opacity:0.99646648"
+       id="rect5718-6"
+       width="298.86142"
+       height="10.289969"
+       x="120.56931"
+       y="178.58885" />
+    <rect
+       style="fill:#0000ff;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect4147-7"
+       width="100"
+       height="10"
+       x="420"
+       y="178.73384" />
+    <rect
+       style="fill:#0000ff;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect4147-3-5"
+       width="100"
+       height="10"
+       x="20.714294"
+       y="178.73384" />
+    <path
+       style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1"
+       d="m 85,127.3622 35,0 -5,-5"
+       id="path4192"
+       inkscape:connector-curvature="0" />
+    <path
+       style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1"
+       d="m 85,173.3767 35,0 -5,-5"
+       id="path4192-3"
+       inkscape:connector-curvature="0" />
+    <path
+       style="fill:none;fill-rule:evenodd;stroke:#ff0000;stroke-width:1;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1;stroke-miterlimit:4;stroke-dasharray:6,6;stroke-dashoffset:0"
+       d="m 125,127.3622 335,0"
+       id="path4209"
+       inkscape:connector-curvature="0" />
+    <path
+       style="fill:none;fill-rule:evenodd;stroke:#ff0000;stroke-width:1;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:6, 6;stroke-dashoffset:0;stroke-opacity:1"
+       d="m 124.64286,173.01956 335,0"
+       id="path4209-5"
+       inkscape:connector-curvature="0" />
+  </g>
+</svg>
--- a/pics/good_qscores.png
+++ b/pics/good_qscores.png
--- a/pics/per_base_sequence_content_bad.png
+++ b/pics/per_base_sequence_content_bad.png
--- a/pics/per_sequence_gc_content.png
+++ b/pics/per_sequence_gc_content.png
--- a/pics/per_sequence_gc_content_contaminated.png
+++ b/pics/per_sequence_gc_content_contaminated.png
--- a/pics/per_sequence_quality_good.png
+++ b/pics/per_sequence_quality_good.png
--- a/pics/pretrimmed_qscores.png
+++ b/pics/pretrimmed_qscores.png
--- a/pics/trimming.svg
+++ b/pics/trimming.svg
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:xlink="http://www.w3.org/1999/xlink"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   width="210mm"
+   height="297mm"
+   viewBox="0 0 744.09448819 1052.3622047"
+   id="svg2"
+   version="1.1"
+   inkscape:version="0.91 r13725"
+   sodipodi:docname="trimming.svg">
+  <defs
+     id="defs4">
+    <linearGradient
+       inkscape:collect="always"
+       id="linearGradient5720">
+      <stop
+         style="stop-color:#000000;stop-opacity:1;"
+         offset="0"
+         id="stop5722" />
+      <stop
+         style="stop-color:#000000;stop-opacity:0;"
+         offset="1"
+         id="stop5724" />
+    </linearGradient>
+    <linearGradient
+       inkscape:collect="always"
+       xlink:href="#linearGradient5720"
+       id="linearGradient5726"
+       x1="570"
+       y1="132.3622"
+       x2="410"
+       y2="132.3622"
+       gradientUnits="userSpaceOnUse" />
+    <linearGradient
+       gradientTransform="translate(0.71428566,28.571424)"
+       inkscape:collect="always"
+       xlink:href="#linearGradient5720"
+       id="linearGradient5726-2"
+       x1="629.28571"
+       y1="131.64792"
+       x2="549.28571"
+       y2="131.64792"
+       gradientUnits="userSpaceOnUse" />
+    <linearGradient
+       gradientTransform="translate(0.71428612,59.285707)"
+       inkscape:collect="always"
+       xlink:href="#linearGradient5720"
+       id="linearGradient5726-2-7"
+       x1="349.28571"
+       y1="131.64793"
+       x2="199.28572"
+       y2="131.64793"
+       gradientUnits="userSpaceOnUse" />
+    <linearGradient
+       gradientTransform="translate(0.7142855,90.714275)"
+       inkscape:collect="always"
+       xlink:href="#linearGradient5720"
+       id="linearGradient5726-2-2"
+       x1="629.28571"
+       y1="130.93364"
+       x2="549.28571"
+       y2="130.93364"
+       gradientUnits="userSpaceOnUse" />
+    <linearGradient
+       gradientTransform="translate(0.71428578,120.71427)"
+       inkscape:collect="always"
+       xlink:href="#linearGradient5720"
+       id="linearGradient5726-2-9"
+       x1="630"
+       y1="130.93365"
+       x2="550"
+       y2="130.93365"
+       gradientUnits="userSpaceOnUse" />
+  </defs>
+  <sodipodi:namedview
+     id="base"
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1.0"
+     inkscape:pageopacity="0.0"
+     inkscape:pageshadow="2"
+     inkscape:zoom="1.4"
+     inkscape:cx="294.9256"
+     inkscape:cy="699.24778"
+     inkscape:document-units="px"
+     inkscape:current-layer="layer1"
+     showgrid="true"
+     showguides="false"
+     inkscape:snap-grids="true"
+     inkscape:window-width="1598"
+     inkscape:window-height="868"
+     inkscape:window-x="0"
+     inkscape:window-y="0"
+     inkscape:window-maximized="1">
+    <inkscape:grid
+       type="xygrid"
+       id="grid5708" />
+  </sodipodi:namedview>
+  <metadata
+     id="metadata7">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <g
+     inkscape:label="Layer 1"
+     inkscape:groupmode="layer"
+     id="layer1">
+    <rect
+       style="fill:url(#linearGradient5726);fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646646"
+       id="rect5718"
+       width="610"
+       height="10"
+       x="20"
+       y="132.3622" />
+    <rect
+       style="fill:url(#linearGradient5726-2);fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect5718-8"
+       width="610"
+       height="10"
+       x="20.714283"
+       y="160.93362" />
+    <rect
+       style="fill:url(#linearGradient5726-2-7);fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect5718-8-0"
+       width="610"
+       height="10"
+       x="20.714283"
+       y="191.64789" />
+    <rect
+       style="fill:url(#linearGradient5726-2-2);fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect5718-8-5"
+       width="610"
+       height="10"
+       x="20.714285"
+       y="223.07649" />
+    <rect
+       style="fill:url(#linearGradient5726-2-9);fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-opacity:0.99646648"
+       id="rect5718-8-8"
+       width="610"
+       height="10"
+       x="20.714287"
+       y="253.07648" />
+  </g>
+</svg>