Data analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.
Program that solves sensitivity/specificity tables.
Library implementing Generalized Enhanched Suffix Arrays (GESAs)
Forked from https://github.com/kurpicz/sais-lite-lcp.git
Mirror of Open Grid Engine code -- with modifications
Mirror of https://github.com/SuperElastix/SuperElastix.git
Mirror of https://github.com/biopet/gatk.git
This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.
Run the Grid part of the alternative polyadenylation pipeline