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A PyTorch implementation of Tree-structured Conditional Random Fields.

RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported

This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.

Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.

Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

Comparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.

Generate metagenome-assembled genomes of Ruminococcus gnavus from recurrent Clostridioides difficile infected patient metagenomes

LacyTools with some fixes

Rust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data.