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Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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Sam Nooij / FECBUD microbiota analyses
BSD 3-Clause "New" or "Revised" LicenseMicrobiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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James Gallant / InfiniumBrowser
MIT LicenseUpdated -
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Cats / KeyGenes
MIT LicenseUpdated -
Leiden450K contains a couple of functions for preprocessing of Illumina Human 450K array data, such as reading idat files in parallel, filtering probes and normalization.
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Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.
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Longevity defined as the top 10% survivors ...
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