Explore projects
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Sam Nooij / R. gnavus comparative genomics
BSD 3-Clause "New" or "Revised" LicenseComparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.
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This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.
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Sam Nooij / Pacbio Assembly Benchmark
BSD 3-Clause "New" or "Revised" LicenseUpdated -
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Sam Nooij / rCDI resistome and MDRO analyses
BSD 3-Clause "New" or "Revised" LicenseAnalyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms
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Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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James Gallant / InfiniumBrowser
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Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.
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