Explore projects
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Sam Nooij / metagenomics-scaffold-classification
BSD 2-Clause "Simplified" LicenseAn automated workflow for taxonomically classifying assembled scaffolds from metagenomics data.
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Sam Nooij / metagenomics-plasmid-assembly
BSD 2-Clause "Simplified" LicenseAn automated workflow for generating metagenomic assemblies with a focus on reconstructing plasmids.
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Sam Nooij / screen_pks_in_polyposis_fecal_metagenomes
BSD 2-Clause "Simplified" LicenseScreen fecal metagenomes of polyposis patients for the presence of the pks gene island of procarcinogenic E. coli
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Sam Nooij / Jovian screener
GNU General Public License v3.0 onlyA pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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SASC / sentinel-legacy
Apache License 2.0JSON-based database for next generation sequencing statistics
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