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Run the Grid part of the alternative polyadenylation pipeline
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Laros / piletools
MIT LicenseUpdated -
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Klinische Genetica / capture-lumc / vtools
MIT LicenseVarious tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed
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Laros / barcode
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Mihai Lefter / gbparser
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Sam Nooij / Jovian screener
GNU General Public License v3.0 onlyA pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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Fokkema / Ribosome profiling
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
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This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.
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