Explore projects

A project to handle thread crashes in a sandbox

JSON-based database for next generation sequencing statistics

Mirror of https://github.com/biopet/biopet.git

Fast and accurate gene and allele detection directly using WGS data

Primer design module

Mirror of https://github.com/mutalyzer/ssr-extractor.git

Mirror of https://github.com/mutalyzer/ansible-role-mutalyzer.git

A library for parsing FAM files from Python or Javascript

This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.

Nonrigid image registration using multi-scale 3D convolutional neural networks

Various utility scripts useful for automated pipeline runs.