Explore projects
-
Chouaref / Snakemake_ChIP_seq_pipeline
MIT LicenseRepository containing a Snakemake ChIPseq pipeline for SE and PE datasets
Updated -
Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
Updated -
Sam Nooij / metagenomics-bacterial-profiling
GNU General Public License v3.0 or laterTaxonomic profiling of metagenomics reads using bacterial and Archaeal marker genes
Updated -
Sam Nooij / Create MAGs from filtered reads-Kraken
BSD 3-Clause "New" or "Revised" LicenseUse Kraken2 to quickly classify metagenomic reads and extract reads of taxa of interest to then assemble metagenomic assembled genomes (MAGs)
Updated -
Sam Nooij / metagenomics-scaffold-classification
BSD 2-Clause "Simplified" LicenseAn automated workflow for taxonomically classifying assembled scaffolds from metagenomics data.
Updated -
Sam Nooij / metagenomics-plasmid-assembly
BSD 2-Clause "Simplified" LicenseAn automated workflow for generating metagenomic assemblies with a focus on reconstructing plasmids.
Updated -
Sam Nooij / screen_pks_in_polyposis_fecal_metagenomes
BSD 2-Clause "Simplified" LicenseScreen fecal metagenomes of polyposis patients for the presence of the pks gene island of procarcinogenic E. coli
Updated -
Laros / dict-trie
MIT LicenseUpdated -
UpdatedUpdated
-
Mutalyzer / mutalyzer2
Creative Commons Attribution Share Alike 4.0 InternationalHGVS variant nomenclature checker
Updated -
Sam Nooij / Jovian screener
GNU General Public License v3.0 onlyA pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
Updated -
Updated
-
apis / florea-pycli
BSD 3-Clause "New" or "Revised" LicensePython implementation of Florea command line tools.
Updated -
-
-
UpdatedUpdated
-
-
Updated
-
Updated