Explore projects

Comparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.

LacyTools with some fixes

Rust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data.

Flask web application for PONGS project.

Code and tables for translation from variants to haplotypes.

MassyTools, ported to Python 3

A Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).

Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl

Snakemake-based WES/IDP pipeline for LDGA.

Automated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.

Mirror of https://github.com/mutalyzer/backtranslate.git

Mirror of https://github.com/LUMC/mutalyzer.git

Functional metagenomics analysis using the HUMAnN tool version 3