Explore projects
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Martin Larralde / PyFAMSA
GNU General Public License v3.0 onlyCython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
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Martin Larralde / PySWRD
GNU General Public License v3.0 onlyCython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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Martin Larralde / GECCO
GNU General Public License v3.0 onlyGene Clusters with Conditional Random Fields.
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Martin Larralde / PyTantan
GNU General Public License v3.0 onlyCython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
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Sam Nooij / metagenomics-preprocessing
BSD 2-Clause "Simplified" LicenseA Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).
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pongs / pongs-translation
MIT LicenseCode and tables for translation from variants to haplotypes.
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Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl
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hem / hamlet
MIT LicenseRNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported
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Klinische Genetica / capture-lumc / hutspot
GNU Affero General Public License v3.0Snakemake-based WES/IDP pipeline for LDGA.
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Sam Nooij / Automated bacterial assembly from PacBio HiFi
BSD 3-Clause "New" or "Revised" LicenseAutomated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.
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Mirrors / backtranslate
MIT LicenseUpdated -
A collection of semi-reusable scripts, which are not part of any official toolchain
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Mirrors / mutalyzer
Creative Commons Attribution Share Alike 4.0 InternationalMirror of https://github.com/LUMC/mutalyzer.git
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pongs / gstandaard-python
MIT LicenseUpdated -