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VKGL-development / aule
MIT LicenseA web interface to the Varda database for genomic variation frequencies
This project is a fork of https://github.com/varda/aule.git
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Sam Nooij / pks in rCDI metagenomes analysis
BSD 2-Clause "Simplified" LicenseAnalysis scripts used to analyse the procarcinogenic pks gene island in metagenomes of multiple recurrent Clostridioides difficile infected patients and their corresponding healthy donors from the Netherlands Donor Feces Bank.
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Mutalyzer / mutalyzer2
Creative Commons Attribution Share Alike 4.0 InternationalHGVS variant nomenclature checker
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Sam Nooij / FECBUD microbiota analyses
BSD 3-Clause "New" or "Revised" LicenseMicrobiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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anatomy / WebGL Viewer
Apache License 2.0Public repository containing the code for the open source WebGL viewer based on BabylonJS
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Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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Mirrors / mutalyzer
Creative Commons Attribution Share Alike 4.0 InternationalMirror of https://github.com/LUMC/mutalyzer.git
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Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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van Helden / gitcourse
Creative Commons Attribution 4.0 InternationalUpdated -
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Fork of part 3 analysis of the script
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