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Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

This is meant as a playground for learning some basics in version control and code collaboration.

Various tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

LLS Proteome Project Repository for code and scripts used in the LLS Proteome Project

A PyTorch implementation of Tree-structured Conditional Random Fields.

RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported

This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.