Assignments for our programming course
Basic chip-seq analysis pipeline
Flexible illumina sequence preprocessing pipeline
Rig framework pipeline -- magpie
Rig framework pipeline -- gatk01
Generic transcriptome analysis pipeline
Hybrid reference deepsage pipeline
Supporting material for our programming course
Modular framework for bioinformatics pipelines
Short presentation on PyVCF
htseq-count tool wrapper for the Rig framework
Python module for parsing Cyto HD array output files.
Just some testing with Pandas