Explore projects

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.

Repository containing a Snakemake ChIPseq pipeline for SE and PE datasets

Repository for Jianhui's snakemake pipeline

Cython bindings and Python interface to HMMER3.

Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

(Unofficial) Cython bindings and Python interface to the NCBI C++ Toolkit.

Shiny app designed by Ben Johnson to quickly analyze calcium trace outputs. Attached manual to explain the parameters and how to analyze your traces.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Cython bindings and Python interface to Jess, a 3D template matching software.

Gene Clusters with Conditional Random Fields.

Supporting material for our programming course

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.