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VKGL-development / aule
MIT LicenseA web interface to the Varda database for genomic variation frequencies
This project is a fork of https://github.com/varda/aule.git
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This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.
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Hoogenboom / fdstools
BSD 3-Clause "New" or "Revised" LicenseData analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.
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Sam Nooij / pks in rCDI metagenomes analysis
BSD 2-Clause "Simplified" LicenseAnalysis scripts used to analyse the procarcinogenic pks gene island in metagenomes of multiple recurrent Clostridioides difficile infected patients and their corresponding healthy donors from the Netherlands Donor Feces Bank.
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Mutalyzer / mutalyzer2
Creative Commons Attribution Share Alike 4.0 InternationalHGVS variant nomenclature checker
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Sam Nooij / FECBUD microbiota analyses
BSD 3-Clause "New" or "Revised" LicenseMicrobiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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anatomy / WebGL Viewer
Apache License 2.0Public repository containing the code for the open source WebGL viewer based on BabylonJS
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van Helden / gitcourse
Creative Commons Attribution 4.0 InternationalUpdated -
Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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Fork of part 3 analysis of the script
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