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A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

Various utility scripts useful for automated pipeline runs.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

Cython bindings and Python interface to HMMER3.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Repository for Jianhui's snakemake pipeline

Repository containing a Snakemake ChIPseq pipeline for SE and PE datasets

Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Ansible role for Icinga