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Hoogenboom / tssv
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Ansible role for Icinga (client)
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Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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pongs / pongs-translation
MIT LicenseCode and tables for translation from variants to haplotypes.
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Martin Larralde / Pyskani
MIT LicensePyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
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Sam Nooij / R. gnavus comparative genomics
BSD 3-Clause "New" or "Revised" LicenseComparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.
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RP3 / verification
BSD 3-Clause "New" or "Revised" LicensePython package for performing grid-based verification of BIOS files.
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This ansible role will install the FollowYou printer queue for use in LUMCNET and RESEARCHLUMC domain.
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Ansible role for Elasticsearch
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Mirrors / backtranslate
MIT LicenseUpdated -
Sam Nooij / Automated bacterial assembly from PacBio HiFi
BSD 3-Clause "New" or "Revised" LicenseAutomated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.
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Human Genetics devops / ansible-role-sssd
MIT LicenseThis role installs the System Security Services Daemon (SSSD). It will allow authentication from a Microsoft's Active Directory.
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Here we try to benchmark multiple bam_to_cram conversion tools, including samtools, scramble and sambama
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Generic repository for everything which doesn't fit in other repositories.
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