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Assignments for our programming course

Quick search for a large DMD deletion in GoNL

This project contains information about the general usage of the LUMC central High Performance/Throughput cluster Shark.

Flexible illumina sequence preprocessing pipeline

Slides for a presentation on alignment methods

This public project contains example workflows (NB see myExperiment for more examples and examples curated by Taverna developers.)

Contains easybuileasyconfig files to permit building the required tools for faster pipelines. The *.eb files are stored in the same hierarchy as in https://github.com/hpcugent/easybuild-easyconfigs and should be pulled and added to the eb robot-path.

samtools tool wrapper for the Rig framework

Rig framework pipeline -- gatk01