Explore projects

Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.

Comparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.

Generate and Annotate DNAse-seq footprint with Transcription factor binding sites.

Project NGS code with Van der Weegen et al; ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation; NCB 2021

Reference Values for Nerve Conduction Studies from Existing Data Using Mixture Model Clustering

Generic transcriptome analysis pipeline

Hybrid reference deepsage pipeline

R scripts that could be useful for analysis in RP3. For example, extracting information from the metaDb, calculating GC content and length based on the exons files, RNAseq normalization e.g. cqn, ...

Functional metagenomics analysis using the HUMAnN tool version 3

Longevity defined as the top 10% survivors ...