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Forked from https://github.com/kurpicz/sais-lite-lcp.git

Library implementing Generalized Enhanched Suffix Arrays (GESAs)

Data analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

Mirror of https://github.com/biopet/gatk.git

Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

Mirror of https://github.com/SuperElastix/SuperElastix.git

Run the Grid part of the alternative polyadenylation pipeline

Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.

This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.

Mirror of Open Grid Engine code -- with modifications

Cython bindings and Python interface to Jess, a 3D template matching software.

Cython bindings and Python interface to HMMER3.