Explore projects
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Klinische Genetica / capture-lumc / hutspot
GNU Affero General Public License v3.0Snakemake-based WES/IDP pipeline for LDGA.
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Sam Nooij / metagenomics-scaffold-classification
BSD 2-Clause "Simplified" LicenseAn automated workflow for taxonomically classifying assembled scaffolds from metagenomics data.
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Sam Nooij / metagenomics-plasmid-assembly
BSD 2-Clause "Simplified" LicenseAn automated workflow for generating metagenomic assemblies with a focus on reconstructing plasmids.
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Sam Nooij / Jovian screener
GNU General Public License v3.0 onlyA pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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hem / hamlet
MIT LicenseRNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported
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Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl
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Klinische Genetica / capture-lumc / vtools
MIT LicenseVarious tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed
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Hoogenboom / fdstools
BSD 3-Clause "New" or "Revised" LicenseData analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.
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Sam Nooij / metagenomics-preprocessing
BSD 2-Clause "Simplified" LicenseA Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).
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