Explore projects

Generic repository for everything which doesn't fit in other repositories.

LacyTools with some fixes

Repository for Jianhui's snakemake pipeline

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Python implementation of Florea command line tools.

Repository containing a Snakemake ChIPseq pipeline for SE and PE datasets

Taxonomic profiling of metagenomics reads using bacterial and Archaeal marker genes

HGVS variant nomenclature checker

Reusable elements and utilities for the LUMC API infrastructure.

Various utility scripts useful for automated pipeline runs.

Use Kraken2 to quickly classify metagenomic reads and extract reads of taxa of interest to then assemble metagenomic assembled genomes (MAGs)

Comparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.