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Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Cython bindings and Python interface to Jess, a 3D template matching software.

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

This is meant as a playground for learning some basics in version control and code collaboration.

Rust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

(Unofficial) Cython bindings and Python interface to the NCBI C++ Toolkit.

Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

A NumPy port of the NEAR code for embedding protein sequences.

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

Generic transcriptome analysis pipeline