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A web interface to the Varda database for genomic variation frequencies

This project is a fork of https://github.com/varda/aule.git

This project contains the downstream analysis of the miRNA and mRNA profile and also the network analysis

Reusable elements and utilities for the LUMC API infrastructure.

(Unofficial) Cython bindings and Python interface to the NCBI C++ Toolkit.

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

Various utility scripts useful for automated pipeline runs.

Cython bindings and Python interface to Jess, a 3D template matching software.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

Cython bindings and Python interface to HMMER3.

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.