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LLS Proteome Project Repository for code and scripts used in the LLS Proteome Project

Example interactive visualizations using Jupyter and Bokeh

3D Ultrasound

Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.

Dependency free, Cython-compatible scoring matrices to use with biological sequences.

This pipeline takes paired-end fastq files, does a quick genome assembly on them (via Velvet + kmergenie), and predicts antibiotic resistance via abricate.

A collection of semi-reusable scripts, which are not part of any official toolchain

varscan module for GENTRAP

Detect alternative polyadenylation in RNA-Seq data