Explore projects

This is R course organized by Bioinformatics Center of Expertise (BCE) from Leiden University Medical Center (LUMC).

Functional metagenomics analysis using the HUMAnN tool version 3

Interactive Volcano Plots

Physicochemical properties and indices for amino-acid sequences (ported from R).

Tools to work with and manipulate CouchDB and referenced files on the SRM

Bioinformatics Center of Expertise

Mutalyzer DNA Visualisation

Python package for performing grid-based verification of BIOS files.

This ansible role will install the FollowYou printer queue for use in LUMCNET and RESEARCHLUMC domain.

Ansible role for Elasticsearch

Mirror of https://github.com/mutalyzer/backtranslate.git

Automated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.

This role installs the System Security Services Daemon (SSSD). It will allow authentication from a Microsoft's Active Directory.

Here we try to benchmark multiple bam_to_cram conversion tools, including samtools, scramble and sambama

Mirror of https://github.com/mutalyzer/ssr-extractor.git

Generic repository for everything which doesn't fit in other repositories.

Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses

Longevity defined as the top 10% survivors ...