Adapted introduction

introduction/01_welcome.ipynb

+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "<span style=\"font-size: 200%\">Programming in Python</span>\n",
+    "===\n",
+    "\n",
+    "<br>\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "About the course\n",
+    "===\n",
+    "\n",
+    "* Aimed at PhD students, Postdocs, researchers, analysts, ...\n",
+    "* Programming as a tool to do your research.\n",
+    "* Slightly focussed on bioinformatics.\n",
+    "\n",
+    "**Note:** This is its third session."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "Teachers\n",
+    "===\n",
+    "\n",
+    "* Jeroen Laros<br>\n",
+    "  [j.f.j.laros@lumc.nl](mailto:j.f.j.laros@lumc.nl)\n",
+    "\n",
+    "\n",
+    "* Mihai Lefter<br>\n",
+    "  [m.lefter@lumc.nl](mailto:m.lefter@lumc.nl)\n",
+    "\n",
+    "\n",
+    "* Jonathan Vis<br>\n",
+    "  [j.k.vis@lumc.nl](mailto:j.k.vis@lumc.nl)\n",
+    "\n",
+    "\n",
+    "* Mark Santcroos<br>\n",
+    "  [m.a.santcroos@lumc.nl](mailto:m.a.santcroos@lumc.nl)\n",
+    "\n",
+    "\n",
+    "* Guy Allard<br>\n",
+    "  [w.g.Allard@lumc.nl](mailto:w.g.allard@lumc.nl)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "Program\n",
+    "===\n",
+    "\n",
+    "| Day             | Time  | Lesson                              | Teacher  | \n",
+    "|-----------------|-------|------------------------------------ |----------|\n",
+    "| Monday, 18/9    | 9-10  | Welcome, Introduction to Python (1) | Mihai    | \n",
+    "|                 | 10-11 | Introduction to Python (2)          | Jeroen   |  \n",
+    "|                 | 11-12 | Introduction to Python (3)          | Mihai    | \n",
+    "|                 | 12-13 | Practical help                      |          | \n",
+    "| Tuesday, 19/9   | 9-10  | Assignments review                  |          |\n",
+    "|                 | 10-11 | More Python Goodness (1)            | Mihai    | \n",
+    "|                 | 11-12 | More Python Goodness (2)            | Mihai    | \n",
+    "|                 | 12-13 | IPython Notebook                    | Mark     | \n",
+    "| Wednesday, 20/9 | 9-10  | Assignments review                  |          | \n",
+    "|                 | 10-11 | Data manipulation (NumPy, Pandas)   | Mark     | \n",
+    "|                 | 11-12 | Data visualisation (1)              | Guy      | \n",
+    "|                 | 12-13 | Data visualisation (2)              | Guy      | \n",
+    "| Thursday, 21/9  | 9-10  | Assignments review                  |          | \n",
+    "|                 | 10-11 | Object-oriented programming         | Jonathan | \n",
+    "|                 | 11-12 | Biopython                           | Guy      | \n",
+    "|                 | 12-13 | Putting everything together         | Jeroen   |\n",
+    "\n",
+    "All slides are linked as one-page documents from the course website: [https://git.lumc.nl/courses/programming-course](https://git.lumc.nl/courses/programming-course)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "Software requirements\n",
+    "===\n",
+    "\n",
+    "* Anaconda\n",
+    "    * Python 2.7\n",
+    "    * NumPy, matplotlib, Biopython\n",
+    "* Git\n",
+    "\n",
+    "Anaconda installation instructions [here](https://docs.anaconda.com/anaconda/install/)."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "Exercises\n",
+    "===\n",
+    "\n",
+    "You only learn programming by doing it.\n",
+    "\n",
+    "* Have your laptop open during the lessons.\n",
+    "* Repeat the code from the slides, play around with it.\n",
+    "* Do the exercises.\n",
+    "* There will be a few assignments to submit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "Getting help\n",
+    "===\n",
+    "\n",
+    "* Ask a teacher.\n",
+    "* If it's private, mail one of the teachers.\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "metadata": {
+    "slideshow": {
+     "slide_type": "skip"
+    }
+   },
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<style>/* Remove the vertical scrollbar added by nbconvert. */\n",
+       ".reveal {\n",
+       "  overflow: hidden;\n",
+       "}\n",
+       "\n",
+       "/* Workaround some highlight.js bugs in language autodetection. */\n",
+       "code.objectivec *,\n",
+       "code.perl *,\n",
+       "code.cs *,\n",
+       "code.javascript *,\n",
+       "code.http * {\n",
+       "  color: black ! important;\n",
+       "  font-weight: normal ! important;\n",
+       "}\n",
+       "span.title {\n",
+       "  color: black ! important;\n",
+       "}\n",
+       "span.tag {\n",
+       "  color: black ! important;\n",
+       "}\n",
+       "span.attribute {\n",
+       "  color: black ! important;\n",
+       "}\n",
+       "</style>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "execution_count": 3,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "from IPython.display import HTML\n",
+    "def css_styling():\n",
+    "    styles = open('../styles/custom.css', 'r').read()\n",
+    "    return HTML('<style>' + styles + '</style>')\n",
+    "css_styling()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
+   "source": [
+    "License: [Creative Commons Attribution 3.0 License (CC-by)](http://creativecommons.org/licenses/by/3.0)\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.5.2"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 1
+}