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Commit c65d9283 authored by Laros's avatar Laros
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Merge branch 'barmsijs-to-humgenprojects' into 'master'

Move example reports from barmsijs to humgenprojects

See merge request !3
parents 16d81f77 96f05097
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...@@ -278,7 +278,7 @@ an idea of the metrics of this set of reads. ...@@ -278,7 +278,7 @@ an idea of the metrics of this set of reads.
FastQC also generates an HTML file. We have put the output somewhere online FastQC also generates an HTML file. We have put the output somewhere online
for for
you\footnote{\url{https://barmsijs.lumc.nl/NGS-course/course.fq_fastqc/fastqc_report.html}}. you\footnote{\url{https://humgenprojects.lumc.nl/NGS-course/course.fq_fastqc/fastqc_report.html}}.
% Alignment % Alignment
\subsection{Alignment with Bowtie} \subsection{Alignment with Bowtie}
...@@ -451,7 +451,7 @@ a try to see the effect on the output you get. ...@@ -451,7 +451,7 @@ a try to see the effect on the output you get.
\medskip \medskip
Like FastQC, VEP also creates an HTML file. We have put this online for Like FastQC, VEP also creates an HTML file. We have put this online for
you\footnote{\url{https://barmsijs.lumc.nl/NGS-course/VEP_summary.html}}. you\footnote{\url{https://humgenprojects.lumc.nl/NGS-course/VEP_summary.html}}.
\medskip \medskip
% End of practical % End of practical
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...@@ -18,7 +18,10 @@ Vermaat.[[br]] ...@@ -18,7 +18,10 @@ Vermaat.[[br]]
Martijn Vermaat.[[br]] Martijn Vermaat.[[br]]
[raw-attachment:connecting.pdf Connecting to other machines] - Jeroen [raw-attachment:connecting.pdf Connecting to other machines] - Jeroen
Laros.[[br]] Laros.[[br]]
Practical [raw-attachment:command_practical.pdf handouts]. Practical
- [raw-attachment:command_practical.pdf handouts].
- [https://humgenprojects.lumc.nl/NGS-course/course.fq_fastqc/fastqc_report.html fastQC report].
- [https://humgenprojects.lumc.nl/NGS-course/VEP_summary.html VEP summary].
== Friday, April 17 == == Friday, April 17 ==
[raw-attachment:combining_tools.pdf Combining tools into a pipeline] - Jeroen [raw-attachment:combining_tools.pdf Combining tools into a pipeline] - Jeroen
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