Adding a presentation

good_research_practice/Git-Logo.png

+../presentation-pics/pics/Git-Logo.png
\ No newline at end of file

good_research_practice/Gitlab_Lumc.png

+../presentation-pics/pics/Gitlab_Lumc.png
\ No newline at end of file

grp_for_data_analysis/grp_for_data_analysis.tex → good_research_practice/good_research_practice.tex

 \documentclass[slidestop]{beamer}
 
-\title{Phylogenetic reconstruction}
+\title{Good research practice for data analysis}
 \providecommand{\myConference}{NGS introduction}
 \providecommand{\myDate}{Thursday, 22 May 2014}
 \author{Michiel van Galen}
@@ -31,15 +31,92 @@
 
 % First page of the presentation.
 \section{Introduction}
-\subsection{Some slide}
 \begin{pframe}
-   
   \begin{itemize}
-    \item The \emph{section} command controls the title.
-    \item The \emph{subsection} command controls the frametitle.
+    \item Where and how to process my data?
+    \item What and where to store?
+    \item How to document this?
+    \item What about big data?
   \end{itemize}
 \end{pframe}
 
+\subsection{Git}
+\begin{pframe}
+  We needed to select a system to track a project, analysis and data
+  \bigskip
+
+  Git
+  \begin{figure}
+    \centering
+    \includegraphics[width=0.3\textwidth]{Git-Logo}
+  \end{figure}
+  \begin{itemize}
+    \item Distributed revision control and management system
+    \item Widely used for code tracking
+    \item Also very much capable for tracking analysis, documents, articles
+  \end{itemize}
+\end{pframe}
+
+\subsection{With or without Git}
+\begin{pframe}
+  \begin{itemize}
+    \item Track - who did what
+    \item Store
+    \item Collaborate
+    \item Centralize
+    \item Backup
+    \item Version historu
+    \item Secure your data
+    \item Share!
+  \end{itemize}
+  \bigskip
+  
+  One day Git course
+\end{pframe}
+
+\subsection{Server}
+\begin{pframe}
+  Local implementation of GitLab within the LUMC
+  \bigskip
+
+  Log in with LUMC credentials
+  \bigskip
+  \begin{figure}
+    \centering
+    \includegraphics[width=0.5\textwidth]{Gitlab_Lumc}
+  \end{figure}
+\end{pframe}
+
+\subsection{Ready to start}
+\begin{pframe}
+  Project skeleton available to clone and hit the ground running.
+  \begin{itemize}
+    \item Describe the project 
+    \item Document the pipelines
+    \item Data description
+    \item Select participants
+    \item Maintain big data
+    \item Folder structure
+    \item Log activities
+  \end{itemize}
+\end{pframe}
+
+\subsection{Ipython notebook}
+\begin{pframe}
+  \begin{figure}
+    \centering
+    \includegraphics[width=1.0\textwidth]{ipython_notebook}
+  \end{figure}
+\end{pframe}
+
+\subsection{Scaling computation}
+\begin{pframe}
+  \begin{figure}
+    \centering
+    \includegraphics[width=1.0\textwidth]{scaling_computation}
+  \end{figure}
+\end{pframe}
+
 \section{Questions?}
 \lastpagetemplate
 \begin{pframe}

good_research_practice/ipython_notebook.png

+../presentation-pics/pics/ipython_notebook.png
\ No newline at end of file

good_research_practice/scaling_computation.png

+../presentation-pics/pics/scaling_computation.png
\ No newline at end of file