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Created with Raphaël 2.2.06Feb131Jan2726252423161325Nov151410987428Oct262524211411723Sep1226Aug25232219181185229Jul2826184130Jun2322171630May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug242019181714add samples option to bcftools viewfix gridss somatic filter output paths?fix output paths gridss somatic filteradd missing fasta index input to gridss GeneratePonBedpegive delly more time, specify normal ordinal in gridss GeneratePonBedpe commandupdate parameter_metaadd index to delly call inputs as welladd bcf index input for delly somatic filterincrease time for manta, add index to delly outputsMerge pull request #314 from biowdl/fix_arg_spaceUpdate CHANGELOG.mdfix_arg_spacefix_arg_spaceAdd space between flag and the value followingMerge remote-tracking branch 'origin/develop' into somaticSvadd missing paramter_metaMerge pull request #313 from biowdl/macs2_flagsUpdate CHANGELOG.mdUpdate macs2.wdlUpdate macs2.wdlUpdate macs2.wdlUpdate macs2.wdlDelete calculation for shiftsizeAddress comments from Rubenmacs2_flagsmacs2_flagsFix data type errorAdd a number of macs2 flags so we can adhere to EncodeMerge branch 'develop' into somaticSvfix lint issuesadd various tasks for somatic SV callingadd memory runtime attribute to tabix taskMerge pull request #310 from biowdl/BIOWDL-602Merge branch 'develop' into BIOWDL-602Use latest version of scriptsUpdate changelog with samtools changeAdd parameter_meta for targetFileupdate samtools containersBIOWDL-602BIOWDL-602Add targets file input to samtools viewincrease memory for amberMerge pull request #309 from biowdl/miniwdlMerge branch 'develop' into miniwdlincrease time for AmberMerge pull request #308 from biowdl/gridss