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Created with Raphaël 2.2.022Jul21201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519Update CHANGELOG.Fix tests.Fix some input naming.Fix tests.Fix last set of tasks.Update output names for the first set of tasks.Merge pull request #231 from biowdl/BIOWDL-484Update changelogRemove redundant newline.Add missing interpunction.update changelogBIOWDL-484BIOWDL-484Merge branch 'BIOWDL-484' of https://github.com/biowdl/tasks into BIOWDL-484Update imagesMerge branch 'BIOWDL-484' of https://github.com/biowdl/tasks into BIOWDL-484Update parameter_metaUpdate task with newest featuresUpdate default gatk imagefix view taskOverhaul view taskupdate docker imageupdate default imagesUpdate picard containerupdate samtools imageupdate cutadapt containerAdd parameter_metaMerge pull request #230 from biowdl/SASC-1333Request less memory for htseq-countSASC-1333SASC-1333add function to get the list of chromosomesadd vep taskUse more sort threads for alignment if more alignment threads are usedupdate changelogMerge pull request #228 from biowdl/usepicardUpdate changelogusepicardusepicardUse htsjdk inflaters and deflaters for markduplicatesupdate changeloguse samtools 1.10 and hisat 2.2.0Add outputBAMcompression to STARAdd samtools controls to hisat2Merge pull request #227 from biowdl/BIOWDL-475add parameter_meta