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Created with Raphaël 2.2.021Jan20171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul2928272619181716151211109832127Jun26252421201918171413121165429May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec2413121176Merge branch 'BIOWDL-377' of https://github.com/biowdl/tasks into BIOWDL-377Make bedFiles obligatoryfix indentationupdate submodulesadd changes to changelogMerge remote-tracking branch 'remotes/origin/develop' into BIOWDL-377Merge branch 'develop' into CNV_callingadd AnnotateIntervals, CollectReadCounts, CreateReadCountPanelOfNormals and PreprocessIntervalsMerge pull request #170 from biowdl/BIOWDL-380Fix CI error.reorder gatk.wdlRename cores to threads.Merge branch 'BIOWDL-380' of https://github.com/biowdl/tasks into BIOWDL-380Update LINCENSE date.Update centrifuge.wdlUpdate CHANGELOG.Update scripts submodule.BIOWDL-380BIOWDL-380Reformat parameter_meta.Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-380Merge pull request #169 from biowdl/parameter_metatyposupdate scriptsupdate scriptsMerge remote-tracking branch 'origin/develop' into parameter_metafix linting erroradd parameter_meta to hisat2 and staradd parameter_meta to gffcompare and gff readadd parameter_meta to CPATparameter_metaparameter_metaupdate parameter_meta of minimap2, talon and transcriptcleanadd parameter_meta to BWARemove trailing spaces after \.Update parameter_meta and fix womtool validate error.Add new centrifuge tasks.add parameter_meta to SortVcfadd parameter_meta to chunked-scatteradd parameter_meta to vardictadd parameter_meta to manta, strelka and somaticseqadd parameter_meta to various gatk tasksadd parameter_meta to biowdl input converter and YamltoJsonadd parameter_meta to bowtie